Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GPY18_RS15880 Genome accession   NZ_CP046800
Coordinates   1899609..1900310 (-) Length   233 a.a.
NCBI ID   WP_020329341.1    Uniprot ID   S7JLG0
Organism   Vibrio fluvialis strain 2012V-1235     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1894609..1905310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY18_RS15850 gspL 1894861..1896072 (+) 1212 WP_158147055.1 type II secretion system protein GspL -
  GPY18_RS15855 - 1896082..1896588 (+) 507 WP_020329336.1 type II secretion system protein M -
  GPY18_RS15860 - 1896588..1897346 (+) 759 WP_158147056.1 type II secretion system protein N -
  GPY18_RS15865 cysQ 1897376..1898203 (-) 828 WP_020429367.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  GPY18_RS15870 nudE 1898227..1898775 (-) 549 WP_047459232.1 ADP compounds hydrolase NudE -
  GPY18_RS15875 nfuA 1898921..1899508 (-) 588 WP_024373335.1 Fe-S biogenesis protein NfuA -
  GPY18_RS15880 comF 1899609..1900310 (-) 702 WP_020329341.1 phosphoribosyltransferase family protein Machinery gene
  GPY18_RS15885 bioH 1900397..1901167 (+) 771 WP_158147438.1 pimeloyl-ACP methyl ester esterase BioH -
  GPY18_RS15890 - 1901296..1901766 (+) 471 WP_020329343.1 hypothetical protein -
  GPY18_RS15895 - 1901848..1904157 (-) 2310 WP_158147057.1 Tex family protein -
  GPY18_RS15900 - 1904213..1904875 (-) 663 WP_158147058.1 hypothetical protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26336.37 Da        Isoelectric Point: 8.8535

>NTDB_id=408015 GPY18_RS15880 WP_020329341.1 1899609..1900310(-) (comF) [Vibrio fluvialis strain 2012V-1235]
MLTNRLQKTMFSWLRPSCQLCGLPLESHSTQSLCGACLDWYAPTTRCARCGLPCETATEQCGQCLTSPPPWHKLYCLGDY
RFPLSQSVHQLKYQRQFWQAQPLAGLLAPRIVSPAPLVTCVPLHWRRHAWRGFNQSDVLARQLAQQLGSQYQPRLFSRRL
ATPPQQGLNKAQRRRNLNQAFVLNSAPSHRHIAIVDDVVTTGSTVRQLCNLLLDVGVESLDIYCICRTPEPGD

Nucleotide


Download         Length: 702 bp        

>NTDB_id=408015 GPY18_RS15880 WP_020329341.1 1899609..1900310(-) (comF) [Vibrio fluvialis strain 2012V-1235]
ATGTTAACCAATCGACTTCAAAAAACCATGTTTTCGTGGCTGAGACCGTCGTGTCAGCTGTGCGGTTTGCCCCTTGAATC
GCATAGCACGCAGAGCTTGTGTGGCGCATGCCTCGACTGGTACGCACCAACCACGCGTTGCGCTCGCTGCGGCCTGCCTT
GTGAAACCGCCACCGAGCAGTGTGGCCAATGCCTGACATCGCCGCCGCCATGGCACAAGCTCTATTGTTTGGGCGATTAC
CGCTTTCCACTCAGTCAGAGCGTGCATCAGCTCAAATATCAGCGCCAGTTCTGGCAAGCGCAGCCGCTGGCCGGATTGTT
AGCACCACGAATAGTATCGCCCGCCCCACTGGTGACCTGCGTACCGCTGCACTGGCGCCGCCATGCCTGGCGCGGTTTCA
ATCAAAGTGATGTTTTGGCACGTCAACTTGCGCAGCAACTCGGCAGCCAATACCAGCCTCGGCTGTTTTCCCGTCGCCTG
GCCACCCCGCCGCAGCAAGGCCTGAACAAAGCTCAGCGCCGGCGCAATCTCAACCAAGCTTTTGTCTTAAACAGTGCGCC
GAGCCACAGACACATCGCGATCGTTGATGATGTCGTCACCACAGGCAGTACGGTGCGACAATTATGCAATTTACTGCTTG
ATGTAGGCGTCGAAAGCCTTGATATTTACTGCATATGCCGCACTCCTGAACCGGGTGACTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S7JLG0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

64.807

100

0.648
  comF Vibrio campbellii strain DS40M4

49.791

100

0.511

Multiple sequence alignment