Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   GPY18_RS09815 Genome accession   NZ_CP046800
Coordinates   613227..613820 (-) Length   197 a.a.
NCBI ID   WP_024374700.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 2012V-1235     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 608227..618820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY18_RS09795 - 608404..609675 (-) 1272 WP_158146708.1 DUF945 family protein -
  GPY18_RS09800 - 609905..611836 (+) 1932 WP_158146709.1 ATP-binding protein -
  GPY18_RS09805 - 611859..612356 (+) 498 WP_020327711.1 response regulator -
  GPY18_RS09810 - 612582..613130 (+) 549 WP_020327712.1 hypothetical protein -
  GPY18_RS09815 tfoX 613227..613820 (-) 594 WP_024374700.1 TfoX/Sxy family DNA transformation protein Regulator
  GPY18_RS09820 - 614193..615113 (+) 921 WP_075988689.1 HDOD domain-containing protein -
  GPY18_RS09825 - 615133..616038 (+) 906 WP_020327715.1 lysine exporter LysO family protein -
  GPY18_RS09830 - 616185..616697 (+) 513 WP_158146710.1 hypothetical protein -
  GPY18_RS09835 panP 616837..618480 (+) 1644 WP_075988691.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 23200.67 Da        Isoelectric Point: 7.8116

>NTDB_id=407992 GPY18_RS09815 WP_024374700.1 613227..613820(-) (tfoX) [Vibrio fluvialis strain 2012V-1235]
MDMFEHRFFDYVIKFGTYQKRSMFGGIGLFQQDAMYALLTEDCIFIRGGEDLDEVLTNLGCDKYRHVKKQTTATVNYYDI
TQLFEQNHSELDSIIERSILYSIEQRSFQKSQANRRLRDLPNMQLTLERMVKKAGVDDVETFMRLGAPDVFNKVRRIYGS
DLDVKLLWKFAGAIEGIHWKLLQEPRKRQLLDICHGR

Nucleotide


Download         Length: 594 bp        

>NTDB_id=407992 GPY18_RS09815 WP_024374700.1 613227..613820(-) (tfoX) [Vibrio fluvialis strain 2012V-1235]
ATGGATATGTTTGAGCATAGATTTTTCGATTATGTAATTAAGTTTGGTACCTACCAAAAACGTTCTATGTTTGGTGGTAT
TGGGTTGTTCCAGCAAGACGCGATGTATGCGCTGCTGACAGAAGATTGCATTTTCATTCGCGGCGGCGAAGATCTCGATG
AAGTTTTGACGAATCTTGGCTGTGATAAGTACCGTCATGTGAAGAAGCAGACAACGGCCACCGTTAATTACTACGATATT
ACGCAGTTATTTGAACAGAACCACTCTGAACTGGACTCCATTATTGAACGTTCAATACTGTATTCCATTGAGCAGCGCTC
TTTTCAGAAATCCCAGGCGAACCGTCGTTTGAGGGATTTGCCGAATATGCAGTTGACGCTGGAACGAATGGTAAAGAAAG
CGGGCGTTGACGATGTGGAAACATTCATGCGTCTGGGTGCGCCGGATGTGTTTAACAAAGTTCGCCGCATTTATGGCAGC
GATCTGGATGTGAAGTTATTGTGGAAGTTTGCCGGAGCGATTGAAGGTATTCACTGGAAATTGCTGCAAGAGCCGCGTAA
GCGCCAATTGCTCGATATCTGTCACGGTCGTTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(114-192)

TfoX N-terminal domain (TfoX_N)

(12-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

80

98.985

0.792
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

80

98.985

0.792
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

80

98.985

0.792
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

80

98.985

0.792
  tfoX Vibrio cholerae strain A1552

80

98.985

0.792
  tfoX Vibrio campbellii strain DS40M4

67.692

98.985

0.67
  tfoX Vibrio parahaemolyticus RIMD 2210633

67.179

98.985

0.665
  tfoX Aliivibrio fischeri ES114

58.115

96.954

0.563

Multiple sequence alignment