Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HZZ00_RS29155 Genome accession   NZ_CP058977
Coordinates   6713420..6715042 (-) Length   540 a.a.
NCBI ID   WP_180329219.1    Uniprot ID   -
Organism   Streptomyces sp. NEAU-sy36     
Function   promote branch migration; interact with DprA; integration of tDNA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6708420..6720042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZZ00_RS29130 (HZZ00_29130) rpsB 6708722..6709612 (-) 891 WP_180329215.1 30S ribosomal protein S2 -
  HZZ00_RS29135 (HZZ00_29135) - 6709886..6710449 (+) 564 WP_180329216.1 murein hydrolase activator EnvC -
  HZZ00_RS29140 (HZZ00_29140) - 6710463..6711020 (-) 558 WP_070022279.1 TetR/AcrR family transcriptional regulator -
  HZZ00_RS29145 (HZZ00_29145) whiG 6711084..6711926 (-) 843 WP_180329217.1 RNA polymerase sigma factor WhiG -
  HZZ00_RS29150 (HZZ00_29150) dprA 6712248..6713423 (-) 1176 WP_180329218.1 DNA-processing protein DprA -
  HZZ00_RS29155 (HZZ00_29155) comM 6713420..6715042 (-) 1623 WP_180329219.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HZZ00_RS29160 (HZZ00_29160) - 6715043..6715405 (-) 363 WP_070022283.1 YraN family protein -
  HZZ00_RS29165 (HZZ00_29165) - 6715532..6715840 (-) 309 WP_043444228.1 DUF2469 domain-containing protein -
  HZZ00_RS29170 (HZZ00_29170) - 6715897..6716415 (-) 519 WP_180329220.1 NUDIX hydrolase -
  HZZ00_RS29175 (HZZ00_29175) lepB 6716405..6717190 (-) 786 WP_180329221.1 signal peptidase I -
  HZZ00_RS29180 (HZZ00_29180) lepB 6717302..6718165 (-) 864 WP_374028568.1 signal peptidase I -
  HZZ00_RS29185 (HZZ00_29185) lepB 6718155..6719300 (-) 1146 WP_257585459.1 signal peptidase I -
  HZZ00_RS29190 (HZZ00_29190) lepB 6719293..6719991 (-) 699 WP_180329223.1 signal peptidase I -

Sequence

Protein


Download         Length: 540 a.a.        Molecular weight: 56192.49 Da        Isoelectric Point: 6.3235

>NTDB_id=407902 HZZ00_RS29155 WP_180329219.1 6713420..6715042(-) (comM) [Streptomyces sp. NEAU-sy36]
MAFARTCSVALVGVEGVVVEVQADLEPGVAAFTLVGLPDKSLTESRDRVRAAVVNSGAEWPQKKLTVGLSPASVPKAGSG
FDLAVACAVLGAAERIDPRVLADIVMIGELGLDGRVRPVRGILPAVLAAADAGYEQVVVPECAAAEAALVPGVSVLGVRS
LRQLIAVLAEEPVPEEPDEPGRPDPLLAGLRVPGTGAATGMHSLGAAQHESEHDLADVVGQTSARTAVEVAAAGGHHLFL
EGPPGAGKTMLAERLPAVLPGLTREESLEVTAVHSVAGLLPPGKPLIDVAPYCAPHHSATMQSLVGGGPGVARPGAVSLA
HRGVLFLDEAPEFHSQTLDALRQPLESGHVVIARSAGVVRFPARFLMVLAANPCPCGRFSQRDTLCECPPSVIRRYQARL
SGPLLDRVDLRVEVDPVTRAQLTAPGARGESTATVADRVRQARERAAARLAGTPWRTNGEVPGRELRGRFQAAAGAMDEA
ERSLERGVLTARGIDRVLRVAWTVADLVGHDRPDAADVALALHLRTGVPRGVPMAIEALT

Nucleotide


Download         Length: 1623 bp        

>NTDB_id=407902 HZZ00_RS29155 WP_180329219.1 6713420..6715042(-) (comM) [Streptomyces sp. NEAU-sy36]
ATGGCGTTCGCCCGTACCTGCTCCGTGGCCCTGGTCGGCGTCGAGGGCGTGGTCGTGGAGGTCCAGGCCGACCTCGAACC
GGGCGTGGCCGCGTTCACCCTGGTCGGCCTGCCCGACAAGAGCCTGACCGAGAGCCGGGACCGGGTCAGGGCGGCGGTGG
TGAACTCGGGCGCCGAGTGGCCGCAGAAGAAACTCACCGTCGGCCTCAGCCCCGCCTCGGTGCCGAAGGCCGGCTCCGGT
TTCGACCTGGCCGTGGCGTGCGCGGTGCTCGGGGCCGCCGAGCGGATCGACCCCCGGGTCCTCGCCGACATCGTCATGAT
CGGCGAGCTGGGCCTGGACGGCCGGGTGCGTCCGGTGCGCGGCATCCTGCCCGCCGTGCTGGCCGCCGCCGACGCCGGGT
ACGAGCAGGTGGTCGTGCCGGAGTGCGCCGCCGCGGAGGCCGCGCTGGTCCCCGGGGTGTCGGTGCTCGGCGTGCGCAGC
CTGCGCCAGCTCATCGCGGTGCTCGCCGAGGAACCCGTCCCCGAGGAGCCCGACGAGCCGGGCCGTCCCGACCCGCTGCT
GGCCGGACTGCGGGTACCGGGCACCGGCGCCGCCACCGGCATGCACAGCCTCGGCGCCGCCCAGCACGAAAGCGAGCACG
ACCTGGCCGACGTGGTCGGCCAGACCTCGGCCCGCACGGCCGTGGAGGTCGCCGCCGCGGGCGGGCACCACCTGTTCCTG
GAGGGGCCGCCGGGCGCGGGCAAGACGATGCTCGCCGAACGGCTGCCCGCCGTCCTGCCGGGGCTCACCCGGGAGGAGTC
CCTGGAGGTCACGGCGGTGCACTCGGTGGCCGGGCTGCTGCCACCGGGCAAACCGCTCATCGACGTCGCCCCCTACTGCG
CCCCGCACCACTCGGCGACGATGCAGTCACTCGTGGGCGGCGGCCCAGGCGTCGCCCGCCCGGGCGCGGTCTCCCTCGCC
CATCGTGGCGTTCTCTTCCTGGACGAGGCACCCGAGTTCCACAGCCAGACCCTGGACGCGTTGCGGCAGCCACTGGAGTC
CGGGCACGTGGTGATCGCGCGCAGCGCGGGCGTGGTCCGCTTTCCGGCACGCTTCCTGATGGTGCTGGCCGCCAATCCCT
GCCCCTGCGGACGCTTCTCGCAGCGCGACACCCTGTGCGAGTGCCCGCCCTCGGTGATCCGCCGCTACCAGGCCCGGCTC
TCCGGGCCGCTGCTCGACCGGGTGGACCTGCGCGTCGAGGTCGATCCGGTCACCCGGGCCCAGCTGACCGCGCCGGGCGC
CCGCGGCGAGTCCACGGCGACCGTCGCCGACCGGGTGCGGCAGGCCCGGGAGCGGGCCGCCGCCCGCCTCGCCGGCACGC
CCTGGCGGACCAACGGCGAGGTGCCCGGCAGGGAGCTGCGCGGACGCTTCCAGGCCGCCGCCGGAGCGATGGACGAGGCG
GAGCGCAGCCTGGAGCGGGGCGTGCTCACCGCCCGCGGCATCGACCGGGTGCTGCGCGTCGCCTGGACGGTGGCCGACCT
CGTCGGACACGACCGCCCGGACGCGGCCGACGTCGCCCTCGCCCTGCATCTGCGCACCGGCGTCCCCCGAGGGGTCCCGA
TGGCCATCGAGGCGCTGACATGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(214-420)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(429-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae O1 biovar El Tor strain E7946

40.304

97.407

0.393
  comM Vibrio cholerae strain A1552

40.304

97.407

0.393
  comM Vibrio campbellii strain DS40M4

39.81

97.222

0.387
  comM Haemophilus influenzae Rd KW20

38.113

98.148

0.374
  comM Acinetobacter baylyi ADP1

39.293

94.259

0.37
  comM Glaesserella parasuis strain SC1401

36.792

98.148

0.361

Multiple sequence alignment