Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   GPY30_RS10595 Genome accession   NZ_CP046791
Coordinates   2082532..2083119 (-) Length   195 a.a.
NCBI ID   WP_158133798.1    Uniprot ID   A0AAI9CSH0
Organism   Vibrio navarrensis strain 2462-79     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2077532..2088119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY30_RS10575 - 2077834..2079096 (-) 1263 WP_158133795.1 DUF945 family protein -
  GPY30_RS10580 - 2079285..2081219 (+) 1935 WP_158133796.1 ATP-binding protein -
  GPY30_RS10585 - 2081212..2081709 (+) 498 WP_039443801.1 response regulator -
  GPY30_RS10590 - 2081924..2082472 (+) 549 WP_158133797.1 hypothetical protein -
  GPY30_RS10595 tfoX 2082532..2083119 (-) 588 WP_158133798.1 TfoX/Sxy family DNA transformation protein Regulator
  GPY30_RS10600 - 2083477..2084397 (+) 921 WP_039435476.1 HDOD domain-containing protein -
  GPY30_RS10605 - 2084731..2085634 (+) 904 Protein_1892 lysine exporter LysO family protein -
  GPY30_RS10610 - 2085707..2086219 (+) 513 WP_158133799.1 hypothetical protein -
  GPY30_RS10615 panP 2086390..2088045 (+) 1656 WP_158133800.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22472.59 Da        Isoelectric Point: 6.8486

>NTDB_id=407826 GPY30_RS10595 WP_158133798.1 2082532..2083119(-) (tfoX) [Vibrio navarrensis strain 2462-79]
MDMTEQTFFNYVSQFGDFQKRSMFGGIGLFADDAMFALISNDCYYLRGSNGLDEQLTELGCEKYRHIKKQTTATVNYYDI
SALLETQYADLDSLVRKSIECSVHHRSFQKSSASRRLRDLPNMQLTLERMVKKAGIDDVETFIELGAVEVFNRVRQAYGN
DVDVKLLWKFAGAVEGIHWKLLQEPRRRQLLSACQ

Nucleotide


Download         Length: 588 bp        

>NTDB_id=407826 GPY30_RS10595 WP_158133798.1 2082532..2083119(-) (tfoX) [Vibrio navarrensis strain 2462-79]
ATGGATATGACAGAGCAAACTTTTTTTAACTATGTTAGTCAGTTTGGTGATTTCCAAAAACGTTCTATGTTTGGTGGTAT
CGGTTTATTTGCTGATGATGCGATGTTCGCTTTGATCAGCAACGATTGCTACTACCTTCGTGGCAGCAACGGCTTGGATG
AACAACTGACAGAACTAGGGTGCGAAAAGTATCGTCATATAAAAAAGCAGACGACTGCAACGGTAAACTACTACGACATT
AGCGCGTTGTTAGAAACACAGTATGCAGATCTGGATAGTCTGGTCAGAAAGTCAATTGAGTGTTCCGTTCATCATCGTAG
TTTTCAGAAATCATCCGCCAGCCGCCGGCTCAGAGATTTGCCGAATATGCAGCTGACATTGGAGCGGATGGTGAAGAAAG
CGGGTATAGACGATGTCGAGACGTTTATCGAACTTGGTGCCGTGGAAGTATTTAATCGAGTACGACAAGCGTATGGCAAT
GATGTCGATGTCAAACTGCTGTGGAAATTCGCCGGTGCGGTAGAGGGTATCCATTGGAAACTGCTGCAAGAGCCTCGTCG
TCGCCAACTGCTTTCTGCTTGTCAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(114-192)

TfoX N-terminal domain (TfoX_N)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio campbellii strain DS40M4

74.872

100

0.749
  tfoX Vibrio parahaemolyticus RIMD 2210633

74.872

100

0.749
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

72.539

98.974

0.718
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

72.539

98.974

0.718
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

72.539

98.974

0.718
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

72.539

98.974

0.718
  tfoX Vibrio cholerae strain A1552

72.539

98.974

0.718
  tfoX Aliivibrio fischeri ES114

57.592

97.949

0.564

Multiple sequence alignment