Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   SSUD9_RS04995 Genome accession   NC_017620
Coordinates   1021504..1022169 (-) Length   221 a.a.
NCBI ID   WP_009909826.1    Uniprot ID   -
Organism   Streptococcus suis D9     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1016504..1027169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD9_RS04975 (SSUD9_1014) - 1017152..1017673 (+) 522 WP_002935005.1 AAA family ATPase -
  SSUD9_RS04980 (SSUD9_1015) xerS 1017840..1018910 (+) 1071 WP_014636926.1 tyrosine recombinase XerS Machinery gene
  SSUD9_RS04985 (SSUD9_1016) - 1018980..1020490 (-) 1511 Protein_934 phosphomannomutase/phosphoglucomutase -
  SSUD9_RS04990 (SSUD9_1017) - 1020566..1021507 (-) 942 WP_002935009.1 sensor histidine kinase -
  SSUD9_RS04995 (SSUD9_1018) braR 1021504..1022169 (-) 666 WP_009909826.1 DNA-binding response regulator Regulator
  SSUD9_RS05000 (SSUD9_1019) - 1022208..1022414 (-) 207 WP_370287028.1 type II toxin-antitoxin system RelE family toxin -
  SSUD9_RS05005 (SSUD9_1020) relB 1022455..1022694 (-) 240 WP_002935014.1 type II toxin-antitoxin system RelB family antitoxin -
  SSUD9_RS05010 (SSUD9_1021) - 1022786..1024756 (-) 1971 WP_013730363.1 FtsX-like permease family protein -
  SSUD9_RS05015 (SSUD9_1022) - 1024757..1025509 (-) 753 WP_002935019.1 ABC transporter ATP-binding protein -
  SSUD9_RS05020 (SSUD9_1023) - 1025526..1025909 (-) 384 WP_002935021.1 NisI/SpaI family lantibiotic immunity lipoprotein -
  SSUD9_RS11475 (SSUD9_1024) - 1025922..1026062 (-) 141 WP_002935023.1 hypothetical protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25459.28 Da        Isoelectric Point: 4.7792

>NTDB_id=40781 SSUD9_RS04995 WP_009909826.1 1021504..1022169(-) (braR) [Streptococcus suis D9]
MKKEKIYIVEDDEMIVQLLKQHLGKSYQVESVQNFRAVSQEVAEIKPDLVLMDISLPYYNGFYWTTEIRKTMTMPIIFIS
SSDDEMNAVMAMNMGGDDFVSKPFSLGILDAKIGAFLRRVNQFSKSTDLSIDQFQLSLDGRFSNELEQVQLSPTETKILS
ALLERQGQIVSKEELLEKLWENEEFIDQNTLNVNMTRLRKKVSEVGFERIHTVRGVGYLVK

Nucleotide


Download         Length: 666 bp        

>NTDB_id=40781 SSUD9_RS04995 WP_009909826.1 1021504..1022169(-) (braR) [Streptococcus suis D9]
ATGAAAAAAGAGAAGATTTATATTGTTGAAGATGATGAGATGATTGTCCAGCTCTTGAAGCAGCATTTGGGAAAATCGTA
TCAGGTGGAAAGTGTGCAGAATTTCCGAGCTGTCAGTCAGGAAGTCGCTGAAATCAAACCAGACTTGGTGCTGATGGACA
TTAGCCTGCCTTATTACAACGGTTTTTACTGGACGACAGAAATCCGTAAAACCATGACCATGCCCATTATCTTTATCTCC
TCTAGCGATGATGAGATGAATGCGGTCATGGCCATGAACATGGGTGGCGATGATTTTGTGTCTAAGCCGTTTTCTCTGGG
GATTTTGGATGCCAAAATCGGCGCCTTCTTGCGTCGGGTTAATCAATTCAGCAAATCAACTGATTTGTCAATTGACCAGT
TCCAACTTAGTTTAGACGGGCGATTTTCAAACGAATTGGAACAGGTTCAATTGTCTCCTACGGAAACCAAGATTTTGTCC
GCCTTACTAGAAAGACAAGGGCAGATTGTCAGCAAGGAAGAACTCCTGGAAAAACTCTGGGAAAATGAAGAATTTATTGA
CCAGAACACGCTCAATGTCAACATGACCAGACTGCGTAAGAAGGTGAGCGAAGTCGGGTTTGAACGAATTCATACGGTTC
GTGGCGTGGGGTACTTGGTCAAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-219)

Response regulator receiver domain (Response_reg)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

47.273

99.548

0.471

Multiple sequence alignment