Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PSEFU_RS19125 Genome accession   NC_015556
Coordinates   4122397..4123734 (+) Length   445 a.a.
NCBI ID   WP_013792898.1    Uniprot ID   F6AGK4
Organism   Pseudomonas fulva 12-X     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4117397..4128734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSEFU_RS19100 (Psefu_3814) pgeF 4117567..4118307 (-) 741 WP_013792893.1 peptidoglycan editing factor PgeF -
  PSEFU_RS19105 (Psefu_3815) rluD 4118304..4119278 (-) 975 WP_013792894.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PSEFU_RS19110 (Psefu_3816) - 4119426..4120415 (+) 990 WP_013792895.1 outer membrane protein assembly factor BamD -
  PSEFU_RS23230 (Psefu_3817) - 4120561..4120806 (+) 246 WP_013792896.1 PP0621 family protein -
  PSEFU_RS19120 (Psefu_3818) pilS 4120796..4122388 (+) 1593 WP_013792897.1 sensor histidine kinase Regulator
  PSEFU_RS19125 (Psefu_3819) pilR 4122397..4123734 (+) 1338 WP_013792898.1 sigma-54-dependent transcriptional regulator Regulator
  PSEFU_RS19130 (Psefu_3820) thiO 4123843..4124937 (-) 1095 WP_041706141.1 glycine oxidase ThiO -
  PSEFU_RS19135 (Psefu_3821) - 4125048..4125566 (+) 519 WP_013792900.1 GspH/FimT family pseudopilin -
  PSEFU_RS19140 (Psefu_3822) - 4125667..4126140 (+) 474 WP_013792901.1 GspH/FimT family pseudopilin -
  PSEFU_RS19145 (Psefu_3823) pilV 4126140..4126610 (+) 471 WP_013792902.1 type IV pilus modification protein PilV -
  PSEFU_RS19150 (Psefu_3824) - 4126613..4127647 (+) 1035 WP_013792903.1 PilW family protein -
  PSEFU_RS19155 (Psefu_3825) - 4127659..4128117 (+) 459 WP_013792904.1 pilus assembly PilX family protein -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49662.04 Da        Isoelectric Point: 5.6344

>NTDB_id=40781 PSEFU_RS19125 WP_013792898.1 4122397..4123734(+) (pilR) [Pseudomonas fulva 12-X]
MNRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAKEPFDLCLTDMRMPDGTGLDVVQHIQQRYPQTPVAM
ITAFGSMDTAINALKAGAFDFLTKPVDLGRLRELVDTALRLHSPDDEEAPGASRLLGESPPMRALRAQIQKLARSQAPVY
ISGESGSGKELVARLIHEQGPRRERAFVPVNCGAIPSELMESEFFGHKKGSFTGAVEDKQGLFQAANGGSLFLDEVADLP
LTMQVKLLRAIQEKAVRAVGGQQEVVVDTRILCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIPLLADVM
LKRLNEGIGLPPVKLDGPALEKLKSYRFPGNVRELENMLERAYTLCEGDVICANDLRLADAAPAGENGDASLAQIDNIED
YLEDVERKLIMQALEETRWNRTAAAQRLGLSFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=40781 PSEFU_RS19125 WP_013792898.1 4122397..4123734(+) (pilR) [Pseudomonas fulva 12-X]
ATGAATCGCCAGAGAGCCCTGATCGTCGACGACGAACCCGATATCCGCGAACTGCTGGAGATCACCCTCGGGCGCATGAA
ACTCGACACCCGCAGCGCCCGCAACGTCAAGGAAGCGCGTGAGTGGCTGGCCAAGGAGCCGTTTGATCTGTGCCTGACCG
ACATGCGCATGCCCGACGGCACCGGGCTCGACGTCGTGCAACATATCCAGCAGCGCTACCCGCAAACGCCAGTGGCGATG
ATCACCGCATTCGGCAGCATGGATACCGCGATCAACGCCCTCAAGGCCGGCGCCTTCGATTTTCTGACCAAACCGGTCGA
CCTCGGCCGCCTGCGCGAGCTGGTCGATACGGCGCTGCGCCTGCATAGCCCTGACGATGAAGAAGCCCCTGGCGCCAGTC
GACTACTGGGCGAATCGCCGCCCATGCGCGCCCTGCGCGCACAGATCCAGAAACTCGCCCGCAGCCAGGCGCCGGTGTAC
ATCAGTGGCGAATCGGGCAGCGGCAAGGAGCTGGTCGCCCGTCTGATCCACGAACAGGGCCCGCGCCGCGAACGCGCCTT
CGTGCCGGTCAACTGCGGCGCGATTCCCTCGGAGCTGATGGAAAGCGAATTCTTCGGTCACAAAAAAGGCAGCTTCACCG
GTGCCGTCGAAGACAAACAGGGCCTGTTCCAGGCTGCCAATGGTGGCAGCCTGTTTCTCGACGAAGTGGCCGACCTGCCG
CTGACCATGCAGGTCAAACTGCTGCGCGCCATTCAGGAAAAGGCCGTCCGCGCCGTCGGCGGCCAGCAGGAAGTGGTGGT
CGATACGCGCATCCTGTGCGCCACCCACAAGGACCTCGCCGCCGAAGTAGCAGCCGGCCGCTTCCGCCAGGATCTCTACT
ACCGCCTCAACGTCATCGAACTGCGCGTACCGCCACTGCGCGAACGCCGCGAGGACATTCCCCTGCTGGCCGACGTGATG
CTCAAGCGCCTCAACGAAGGCATCGGCCTGCCGCCAGTCAAGCTCGACGGCCCGGCGCTGGAAAAGCTCAAGAGCTACCG
CTTCCCGGGCAACGTGCGCGAGCTGGAGAACATGCTGGAGCGCGCCTACACGCTGTGCGAAGGCGACGTGATCTGCGCCA
ACGACCTGCGCCTCGCCGACGCCGCACCAGCTGGCGAGAACGGCGACGCCAGCCTGGCACAGATCGACAACATCGAGGAT
TACCTCGAAGACGTCGAACGCAAACTGATCATGCAGGCCCTGGAAGAAACCCGCTGGAACCGCACCGCCGCCGCCCAACG
CCTGGGCCTGAGCTTCCGCTCGATGCGCTATCGCCTGAAAAAGCTCGGCATCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(135-301)

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F6AGK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

86.067

100

0.861
  pilR Acinetobacter baumannii strain A118

49.891

100

0.515
  luxO Vibrio cholerae strain A1552

37.444

100

0.375

Multiple sequence alignment