Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   PSEFU_RS19120 Genome accession   NC_015556
Coordinates   4120796..4122388 (+) Length   530 a.a.
NCBI ID   WP_013792897.1    Uniprot ID   F6AGK3
Organism   Pseudomonas fulva 12-X     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4115796..4127388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSEFU_RS19100 (Psefu_3814) pgeF 4117567..4118307 (-) 741 WP_013792893.1 peptidoglycan editing factor PgeF -
  PSEFU_RS19105 (Psefu_3815) rluD 4118304..4119278 (-) 975 WP_013792894.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PSEFU_RS19110 (Psefu_3816) - 4119426..4120415 (+) 990 WP_013792895.1 outer membrane protein assembly factor BamD -
  PSEFU_RS23230 (Psefu_3817) - 4120561..4120806 (+) 246 WP_013792896.1 PP0621 family protein -
  PSEFU_RS19120 (Psefu_3818) pilS 4120796..4122388 (+) 1593 WP_013792897.1 sensor histidine kinase Regulator
  PSEFU_RS19125 (Psefu_3819) pilR 4122397..4123734 (+) 1338 WP_013792898.1 sigma-54-dependent transcriptional regulator Regulator
  PSEFU_RS19130 (Psefu_3820) thiO 4123843..4124937 (-) 1095 WP_041706141.1 glycine oxidase ThiO -
  PSEFU_RS19135 (Psefu_3821) - 4125048..4125566 (+) 519 WP_013792900.1 GspH/FimT family pseudopilin -
  PSEFU_RS19140 (Psefu_3822) - 4125667..4126140 (+) 474 WP_013792901.1 GspH/FimT family pseudopilin -
  PSEFU_RS19145 (Psefu_3823) pilV 4126140..4126610 (+) 471 WP_013792902.1 type IV pilus modification protein PilV -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58494.70 Da        Isoelectric Point: 8.6495

>NTDB_id=40780 PSEFU_RS19120 WP_013792897.1 4120796..4122388(+) (pilS) [Pseudomonas fulva 12-X]
MPNSALAVRGPQGHRIFRLYHLYRLIIGVVLVLLVSADLDSELLELAHVPLFRGASWVYLMLNVLIALTLHTPNRLLPVF
AVALGDVIMLSALFYAGGGTPSGIGNLLIVSVAIANILLRGRFGVLIAAAASIGMIYLTFYLSLHHSQASAQYVQVGALG
ALSFAAALFVQGVTRRLQASESLAEQRAADVADLETLNNLILQRMRTGILVVDEQRRVLLANQAALALLDQQNLAGKILD
PHCTELVKRLQQWQENSSLRPASLQTLSDGPTLQPSFIPLQRGGQRHILILLDDISQIAQQAQQLKLVALGRLTAGIAHE
IRNPLGAISHAAQLLQESEDLQGPDLRLAQIIQDHSRRMNLIIENVLQLSRRRQAEPQLLDLKYWLHRFAAEFRSTAPAS
KVLHLAIEGSSIQTRMDPNQLNQVITNLVQNGLRHSAKINPQGQVWLKLFRDPRSDLPVLEVLDDGEGVPADQLHHIFEP
FYTTENKGTGLGLYISRELCESNQAHLHYQPREGGGACFRITFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=40780 PSEFU_RS19120 WP_013792897.1 4120796..4122388(+) (pilS) [Pseudomonas fulva 12-X]
GTGCCCAATAGCGCGCTAGCGGTACGTGGGCCCCAGGGCCACCGTATCTTCCGGCTGTACCACCTCTATCGCCTGATCAT
CGGCGTGGTGCTGGTGCTGCTGGTTTCCGCCGATCTGGACTCCGAACTGCTGGAACTGGCCCACGTGCCGCTGTTTCGCG
GCGCCAGCTGGGTCTATCTGATGCTCAACGTCCTGATCGCGCTGACGCTGCACACGCCCAACCGCCTGCTGCCGGTGTTC
GCCGTGGCGCTGGGCGACGTGATCATGCTCTCGGCGCTGTTCTACGCCGGCGGCGGCACGCCAAGCGGCATCGGCAACCT
GCTGATTGTATCGGTCGCGATCGCCAACATCCTGCTGCGCGGGCGCTTCGGCGTGCTGATCGCCGCCGCCGCGTCGATCG
GCATGATCTACCTGACCTTCTACCTGAGCCTGCATCACTCGCAGGCCAGCGCCCAGTACGTGCAGGTCGGTGCCTTGGGC
GCCTTGAGCTTCGCCGCGGCGCTGTTCGTGCAAGGTGTAACCCGCCGCCTGCAGGCCAGCGAAAGCCTCGCCGAACAGCG
CGCCGCCGATGTGGCGGATCTGGAAACCCTCAATAACCTGATCCTGCAGCGCATGCGCACCGGCATTCTGGTGGTGGATG
AACAGCGCCGCGTGCTGCTGGCCAACCAGGCCGCACTCGCCCTGCTGGACCAGCAGAACCTGGCGGGCAAGATTCTCGAC
CCGCACTGCACCGAGCTGGTCAAACGCCTGCAGCAGTGGCAGGAGAACAGCAGCCTGCGTCCTGCCAGCCTGCAGACGCT
CAGCGACGGGCCGACCCTGCAACCCAGCTTCATCCCCCTGCAGCGCGGTGGCCAGCGGCATATTCTGATCCTGCTCGACG
ACATCTCGCAGATCGCCCAGCAGGCCCAGCAACTCAAGCTGGTCGCCCTTGGCCGACTCACCGCCGGCATCGCCCACGAG
ATTCGCAATCCGCTGGGCGCCATCAGCCATGCCGCGCAGCTGCTGCAGGAATCCGAAGACCTGCAGGGGCCGGATCTACG
CCTAGCGCAGATCATTCAGGACCACTCGCGGCGCATGAACCTGATCATCGAGAACGTGCTGCAGCTCTCACGGCGCCGCC
AGGCCGAGCCGCAGCTGCTGGATCTGAAATACTGGCTGCACCGCTTCGCCGCCGAATTTCGCAGCACCGCGCCGGCTTCC
AAGGTGCTGCACCTGGCCATCGAAGGCAGCAGCATCCAGACGCGCATGGACCCCAACCAGCTCAACCAGGTCATCACCAA
CCTGGTGCAAAACGGGCTGCGCCACAGCGCCAAGATCAACCCCCAGGGCCAGGTGTGGCTGAAGCTGTTTCGCGATCCGC
GCAGCGATCTGCCGGTGCTCGAAGTGCTCGACGACGGCGAAGGCGTGCCGGCAGACCAACTGCATCACATCTTCGAGCCT
TTCTACACCACGGAAAACAAAGGCACCGGTCTGGGCCTGTATATTTCCCGCGAGCTTTGCGAAAGCAACCAGGCTCATCT
TCACTATCAACCACGCGAAGGCGGCGGCGCCTGCTTCCGCATCACCTTCGCGCATCCGCGAAAACTGAGCTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F6AGK3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

65.896

97.925

0.645

Multiple sequence alignment