Detailed information NTG0407743

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GPY45_RS08245
• Genome accession: NZ_CP046785
• Coordinates: 1607592..1608461 (-)
• Length: 289 a.a.
• NCBI ID: WP_089203077.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain 2013V-1136
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1602592..1613461

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY45_RS08210	rpsP	1603609..1603857 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
GPY45_RS08215	rimM	1603886..1604434 (+)	549	WP_005462552.1	ribosome maturation factor RimM	-
GPY45_RS08220	trmD	1604462..1605205 (+)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
GPY45_RS08225	rplS	1605247..1605600 (+)	354	WP_005462554.1	50S ribosomal protein L19	-
GPY45_RS08230	yacG	1605946..1606140 (-)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
GPY45_RS08235	zapD	1606209..1606949 (-)	741	WP_023624252.1	cell division protein ZapD	-
GPY45_RS08240	coaE	1606977..1607591 (-)	615	WP_069494409.1	dephospho-CoA kinase	-
GPY45_RS08245	pilD	1607592..1608461 (-)	870	WP_089203077.1	A24 family peptidase	Machinery gene
GPY45_RS08250	pilC	1608526..1609749 (-)	1224	WP_005479682.1	type II secretion system F family protein	Machinery gene
GPY45_RS08255	pilB	1609775..1611460 (-)	1686	WP_089203076.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GPY45_RS08260	pilA	1611466..1611939 (-)	474	WP_005462544.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
GPY45_RS08265	nadC	1612202..1613089 (-)	888	WP_005479699.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32385.45 Da
• Isoelectric Point: 6.8205

>NTDB_id=407743 GPY45_RS08245 WP_089203077.1 1607592..1608461(-) (pilD) [Vibrio parahaemolyticus strain 2013V-1136]
MEVLQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIQPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=407743 GPY45_RS08245 WP_089203077.1 1607592..1608461(-) (pilD) [Vibrio parahaemolyticus strain 2013V-1136]
ATGGAAGTGTTGCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTCAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCAGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATAAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGGATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCATTCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGACCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	89.273	100	0.893
pilD	Vibrio cholerae strain A1552	73.611	99.654	0.734
pilD	Acinetobacter baumannii D1279779	52.985	92.734	0.491
pilD	Acinetobacter nosocomialis M2	52.612	92.734	0.488
pilD	Neisseria gonorrhoeae MS11	46.739	95.502	0.446