Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GPY45_RS07130 Genome accession   NZ_CP046785
Coordinates   1402418..1402948 (+) Length   176 a.a.
NCBI ID   WP_005466625.1    Uniprot ID   Q87LA3
Organism   Vibrio parahaemolyticus strain 2013V-1136     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1397418..1407948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY45_RS07120 galU 1400366..1401238 (-) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPY45_RS07125 qstR 1401495..1402139 (-) 645 WP_005480993.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPY45_RS07130 ssb 1402418..1402948 (+) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  GPY45_RS07135 csrD 1403189..1405198 (+) 2010 WP_020835330.1 RNase E specificity factor CsrD -
  GPY45_RS07140 - 1405210..1406655 (+) 1446 WP_158116403.1 MSHA biogenesis protein MshI -
  GPY45_RS07145 gspM 1406652..1407302 (+) 651 WP_020841336.1 type II secretion system protein GspM -
  GPY45_RS07150 - 1407295..1407624 (+) 330 WP_005481006.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19563.62 Da        Isoelectric Point: 4.9269

>NTDB_id=407735 GPY45_RS07130 WP_005466625.1 1402418..1402948(+) (ssb) [Vibrio parahaemolyticus strain 2013V-1136]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQ
QQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=407735 GPY45_RS07130 WP_005466625.1 1402418..1402948(+) (ssb) [Vibrio parahaemolyticus strain 2013V-1136]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCGGTAGCAAACATCACGATTGCTACTTCTGAGTCATGGCGTGACAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTGTTCGGTAAGTTGGCAGAAGTTGCTGGTGAATACCTGCGTAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGATCGCTACTCAACAGAAGTTGTGGTTCAAGGTTT
CAATGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCTGCAATGGGCGGTCAACAACAGCAGCAAGGCG
GTTGGGGTCAACCTCAACAACCGGCTCAGCAGCAATACAATGCACCTCAACAGCAGCAACAGGCTCCGCAGCAACCACAG
CAGCAATACAACGAGCCACCAATGGATTTTGATGACGATATTCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.006

100

0.824
  ssb Glaesserella parasuis strain SC1401

57.143

100

0.614
  ssb Neisseria meningitidis MC58

48.023

100

0.483
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.483

Multiple sequence alignment