Detailed information NTG0407473

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GPY59_RS22110
• Genome accession: NZ_CP046772
• Coordinates: 2865161..2866030 (+)
• Length: 289 a.a.
• NCBI ID: WP_158174153.1
• Uniprot ID: -
• Organism: Vibrio alginolyticus strain 2014V-1011
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2860161..2871030

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY59_RS22090	nadC	2860565..2861452 (+)	888	WP_064354288.1	carboxylating nicotinate-nucleotide diphosphorylase	-
GPY59_RS22095	-	2861714..2862151 (+)	438	WP_137282354.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
GPY59_RS22100	pilB	2862164..2863849 (+)	1686	WP_158174152.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GPY59_RS22105	pilC	2863873..2865096 (+)	1224	WP_017820393.1	type II secretion system F family protein	Machinery gene
GPY59_RS22110	pilD	2865161..2866030 (+)	870	WP_158174153.1	A24 family peptidase	Machinery gene
GPY59_RS22115	coaE	2866031..2866645 (+)	615	WP_158174154.1	dephospho-CoA kinase	-
GPY59_RS22120	zapD	2866673..2867413 (+)	741	WP_005373086.1	cell division protein ZapD	-
GPY59_RS22125	yacG	2867572..2867766 (+)	195	WP_017635922.1	DNA gyrase inhibitor YacG	-
GPY59_RS22130	rplS	2868709..2869062 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
GPY59_RS22135	trmD	2869104..2869865 (-)	762	WP_017635923.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
GPY59_RS22140	rimM	2869893..2870441 (-)	549	WP_005379964.1	ribosome maturation factor RimM	-
GPY59_RS22145	rpsP	2870471..2870719 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32577.79 Da
• Isoelectric Point: 6.8455

>NTDB_id=407473 GPY59_RS22110 WP_158174153.1 2865161..2866030(+) (pilD) [Vibrio alginolyticus strain 2014V-1011]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQATISARYPLIELLTAFCSGFIAYYFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGEQILNWYFTSVLGV

Nucleotide

• Length: 870 bp

>NTDB_id=407473 GPY59_RS22110 WP_158174153.1 2865161..2866030(+) (pilD) [Vibrio alginolyticus strain 2014V-1011]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTGATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTCCCACGCTCCTCCTGCCAGAAATGCGCAACACCGATACGTATTCGC
GACAACATTCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGTCACAACTGTCAGGCAACCATTAGTGCACGCTATCC
ACTGATTGAACTGCTCACCGCGTTCTGTTCAGGCTTTATCGCTTATTACTTTGGTTTTAGTTACTTTACCGTTGCCCTAC
TCTTTTTCACTTTTATCTTAATCGCCGCAACATTTATCGATCTCGATACTATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGCTACTTACTGGTAAAGAAGGAATGGGATATGGTGATTTTA
AACTACTAGCAGCACTAGGGGCTTGGCTGGGCTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GTATTTGGCATCATTCAACTACGCTTGCAAAAGCAGGGAATTGAAAAAGCTTTCCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGAGCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	91.349	100	0.913
pilD	Vibrio cholerae strain A1552	72.917	99.654	0.727
pilD	Acinetobacter baumannii D1279779	51.852	93.426	0.484
pilD	Acinetobacter nosocomialis M2	51.481	93.426	0.481
pilD	Neisseria gonorrhoeae MS11	47.464	95.502	0.453