Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   GPY10_RS04620 Genome accession   NZ_CP046767
Coordinates   987324..987917 (-) Length   197 a.a.
NCBI ID   WP_199251221.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 2013V-1300     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 982324..992917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY10_RS04600 - 982503..983774 (-) 1272 WP_158151309.1 DUF945 family protein -
  GPY10_RS04605 - 984004..985935 (+) 1932 WP_158151311.1 ATP-binding protein -
  GPY10_RS04610 - 985958..986455 (+) 498 WP_020327711.1 response regulator -
  GPY10_RS04615 - 986681..987229 (+) 549 WP_020327712.1 hypothetical protein -
  GPY10_RS04620 tfoX 987324..987917 (-) 594 WP_199251221.1 TfoX/Sxy family DNA transformation protein Regulator
  GPY10_RS04625 - 988290..989210 (+) 921 WP_020327714.1 HDOD domain-containing protein -
  GPY10_RS04630 - 989230..990135 (+) 906 WP_020327715.1 lysine exporter LysO family protein -
  GPY10_RS04635 - 990282..990794 (+) 513 WP_020327716.1 hypothetical protein -
  GPY10_RS04640 panP 990934..992577 (+) 1644 WP_075988691.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 23158.63 Da        Isoelectric Point: 8.2488

>NTDB_id=407398 GPY10_RS04620 WP_199251221.1 987324..987917(-) (tfoX) [Vibrio fluvialis strain 2013V-1300]
MDMFEHRFFDYVIKFGTYQKRSMFGGIGLFQQDAMYALLTEDCIFIRGGEDLDEVLTNLGCGKYRHVKKQTTATVNYYDI
TQLYEQNHSELDSIIERSILYSIEQRSFQKSQANRRLRDLPNMQLTLERMVKKAGVDDVETFMRLGAPDVFNKVRRIYGS
DLDVKLLWKFAGAIEGIHWKLLQEPRKRQLLDICHGR

Nucleotide


Download         Length: 594 bp        

>NTDB_id=407398 GPY10_RS04620 WP_199251221.1 987324..987917(-) (tfoX) [Vibrio fluvialis strain 2013V-1300]
ATGGATATGTTTGAGCATAGATTTTTCGATTATGTAATTAAGTTTGGTACCTACCAAAAACGTTCTATGTTTGGTGGTAT
TGGGTTGTTCCAGCAAGACGCGATGTATGCGCTGCTGACAGAAGATTGCATTTTCATTCGCGGCGGCGAAGATCTCGATG
AAGTTTTGACGAATCTTGGCTGTGGTAAGTACCGTCATGTGAAGAAGCAGACAACGGCCACCGTTAATTACTACGATATT
ACGCAGTTATATGAACAGAACCACTCTGAACTGGACTCCATTATTGAACGTTCAATACTGTATTCCATTGAGCAGCGCTC
TTTTCAGAAATCCCAGGCGAACCGTCGTTTGAGGGATTTGCCGAATATGCAGTTGACGCTGGAACGAATGGTAAAGAAAG
CGGGCGTTGACGATGTGGAAACATTCATGCGTCTGGGTGCGCCGGATGTGTTTAACAAAGTTCGCCGCATTTATGGCAGC
GATCTGGATGTGAAGTTATTGTGGAAGTTTGCCGGAGCGATTGAAGGTATTCACTGGAAATTGCTGCAAGAGCCGCGTAA
GCGCCAATTGCTCGATATCTGTCACGGTCGTTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(12-99)

TfoX C-terminal domain (TfoX_C)

(114-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

80.513

98.985

0.797
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

80.513

98.985

0.797
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

80.513

98.985

0.797
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

80.513

98.985

0.797
  tfoX Vibrio cholerae strain A1552

80.513

98.985

0.797
  tfoX Vibrio campbellii strain DS40M4

67.179

98.985

0.665
  tfoX Vibrio parahaemolyticus RIMD 2210633

66.667

98.985

0.66
  tfoX Aliivibrio fischeri ES114

57.592

96.954

0.558

Multiple sequence alignment