Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GPY19_RS04275 Genome accession   NZ_CP046763
Coordinates   884620..885150 (-) Length   176 a.a.
NCBI ID   WP_005466625.1    Uniprot ID   Q87LA3
Organism   Vibrio parahaemolyticus strain 2012AW-0353     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 879620..890150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY19_RS04255 - 879931..880260 (-) 330 WP_062905567.1 hypothetical protein -
  GPY19_RS04260 gspM 880253..880903 (-) 651 WP_005497276.1 type II secretion system protein GspM -
  GPY19_RS04265 - 880900..882345 (-) 1446 WP_005481017.1 MSHA biogenesis protein MshI -
  GPY19_RS04270 csrD 882357..884366 (-) 2010 WP_029837280.1 RNase E specificity factor CsrD -
  GPY19_RS04275 ssb 884620..885150 (-) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  GPY19_RS04280 qstR 885429..886073 (+) 645 WP_005480993.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPY19_RS04285 galU 886331..887203 (+) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19563.62 Da        Isoelectric Point: 4.9269

>NTDB_id=407364 GPY19_RS04275 WP_005466625.1 884620..885150(-) (ssb) [Vibrio parahaemolyticus strain 2012AW-0353]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQ
QQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=407364 GPY19_RS04275 WP_005466625.1 884620..885150(-) (ssb) [Vibrio parahaemolyticus strain 2012AW-0353]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCGGTAGCAAACATCACGATTGCTACTTCTGAGTCATGGCGTGACAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTGTTCGGTAAGTTGGCAGAAGTTGCTGGTGAATACCTGCGTAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGATCGCTACTCAACAGAAGTTGTGGTCCAAGGTTT
TAATGGCGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCTGCAATGGGCGGTCAACAACAGCAGCAAGGCG
GTTGGGGTCAACCTCAACAACCGGCTCAGCAGCAATACAATGCACCTCAACAGCAGCAACAGGCTCCGCAGCAACCACAG
CAGCAATACAACGAGCCACCAATGGATTTTGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.006

100

0.824
  ssb Glaesserella parasuis strain SC1401

57.143

100

0.614
  ssb Neisseria meningitidis MC58

48.023

100

0.483
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.483

Multiple sequence alignment