Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | GPY27_RS00795 | Genome accession | NZ_CP046761 |
| Coordinates | 154107..154685 (+) | Length | 192 a.a. |
| NCBI ID | WP_015297396.1 | Uniprot ID | A0A243VIJ8 |
| Organism | Vibrio parahaemolyticus strain AM46865 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 149107..159685
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY27_RS00780 | oxyR | 149430..150338 (+) | 909 | WP_140095569.1 | DNA-binding transcriptional regulator OxyR | - |
| GPY27_RS00785 | - | 150394..152964 (-) | 2571 | WP_140095567.1 | PBP1A family penicillin-binding protein | - |
| GPY27_RS00790 | pilM | 153107..154123 (+) | 1017 | WP_140095565.1 | type IV pilus assembly protein PilM | Machinery gene |
| GPY27_RS00795 | pilN | 154107..154685 (+) | 579 | WP_015297396.1 | PilN domain-containing protein | Machinery gene |
| GPY27_RS00800 | pilO | 154678..155271 (+) | 594 | WP_069486246.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| GPY27_RS00805 | pilP | 155261..155776 (+) | 516 | WP_069486245.1 | pilus assembly protein PilP | Machinery gene |
| GPY27_RS00810 | pilQ | 155808..157556 (+) | 1749 | WP_180784188.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| GPY27_RS00815 | aroK | 157745..158263 (+) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| GPY27_RS00820 | aroB | 158295..159395 (+) | 1101 | WP_069486244.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 192 a.a. Molecular weight: 22438.95 Da Isoelectric Point: 6.9944
>NTDB_id=407305 GPY27_RS00795 WP_015297396.1 154107..154685(+) (pilN) [Vibrio parahaemolyticus strain AM46865]
MLYRINLLPWRENQREEHRRRFVGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEKKEGKQHG
MLYRINLLPWRENQREEHRRRFVGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEKKEGKQHG
Nucleotide
Download Length: 579 bp
>NTDB_id=407305 GPY27_RS00795 WP_015297396.1 154107..154685(+) (pilN) [Vibrio parahaemolyticus strain AM46865]
GTGCTGTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGGGAGTCATGGTGGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTATCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCTGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCACGGCTAGCAACCATGCTCGATAACATGGAACGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTTGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTTAACACGGTAGAAGAGAAGAAAGA
GGGAAAACAACATGGTTAA
GTGCTGTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGGGAGTCATGGTGGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTATCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCTGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCACGGCTAGCAACCATGCTCGATAACATGGAACGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTTGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTTAACACGGTAGAAGAGAAGAAAGA
GGGAAAACAACATGGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
83.333 |
100 |
0.833 |
| pilN | Vibrio cholerae strain A1552 |
62.983 |
94.271 |
0.594 |