Detailed information
Bioinformatically predicted
Overview
| Name | pilP | Type | Machinery gene |
| Locus tag | GPY27_RS00805 | Genome accession | NZ_CP046761 |
| Coordinates | 155261..155776 (+) | Length | 171 a.a. |
| NCBI ID | WP_069486245.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain AM46865 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 150261..160776
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY27_RS00785 | - | 150394..152964 (-) | 2571 | WP_140095567.1 | PBP1A family penicillin-binding protein | - |
| GPY27_RS00790 | pilM | 153107..154123 (+) | 1017 | WP_140095565.1 | type IV pilus assembly protein PilM | Machinery gene |
| GPY27_RS00795 | pilN | 154107..154685 (+) | 579 | WP_015297396.1 | PilN domain-containing protein | Machinery gene |
| GPY27_RS00800 | pilO | 154678..155271 (+) | 594 | WP_069486246.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| GPY27_RS00805 | pilP | 155261..155776 (+) | 516 | WP_069486245.1 | pilus assembly protein PilP | Machinery gene |
| GPY27_RS00810 | pilQ | 155808..157556 (+) | 1749 | WP_180784188.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| GPY27_RS00815 | aroK | 157745..158263 (+) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| GPY27_RS00820 | aroB | 158295..159395 (+) | 1101 | WP_069486244.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 18858.00 Da Isoelectric Point: 10.3608
>NTDB_id=407307 GPY27_RS00805 WP_069486245.1 155261..155776(+) (pilP) [Vibrio parahaemolyticus strain AM46865]
MINKSLLTVLVSALLVGCQANDESLTDFIRGVESQARRDVETLKPADKYIAVAYAPEVMRAPFELPKEATIATQPVARKD
CWQPPNRARSGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVTHSYLLINETLPDGLGC
WQKRKVKLALR
MINKSLLTVLVSALLVGCQANDESLTDFIRGVESQARRDVETLKPADKYIAVAYAPEVMRAPFELPKEATIATQPVARKD
CWQPPNRARSGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVTHSYLLINETLPDGLGC
WQKRKVKLALR
Nucleotide
Download Length: 516 bp
>NTDB_id=407307 GPY27_RS00805 WP_069486245.1 155261..155776(+) (pilP) [Vibrio parahaemolyticus strain AM46865]
ATGATAAATAAATCTTTGCTGACGGTGTTGGTAAGCGCTCTATTGGTCGGGTGCCAGGCGAATGATGAATCATTAACGGA
TTTTATTCGTGGTGTTGAGAGCCAGGCTCGGCGAGATGTGGAGACGCTCAAACCTGCTGACAAATACATCGCAGTGGCGT
ATGCCCCAGAAGTGATGCGTGCTCCTTTCGAATTGCCCAAAGAGGCGACCATCGCAACTCAACCTGTGGCGAGAAAAGAT
TGTTGGCAACCGCCGAACCGAGCGAGATCTGGCAAGTTAGAAAAATTCCCACTCAGCCAACTTCGTTTAAAAGGAGTGAT
GGGTATGGGGAACACCGTTTCTGGTTTAGTACAAGCCCCGAATGGCACGGTTTACAAAGTGAAACCAGGTCAATACCTCG
GGCGCAATAACGGTAAGGTCACGCATGTTACCCACTCCTATTTGTTGATTAATGAAACCTTGCCCGATGGTTTGGGGTGC
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG
ATGATAAATAAATCTTTGCTGACGGTGTTGGTAAGCGCTCTATTGGTCGGGTGCCAGGCGAATGATGAATCATTAACGGA
TTTTATTCGTGGTGTTGAGAGCCAGGCTCGGCGAGATGTGGAGACGCTCAAACCTGCTGACAAATACATCGCAGTGGCGT
ATGCCCCAGAAGTGATGCGTGCTCCTTTCGAATTGCCCAAAGAGGCGACCATCGCAACTCAACCTGTGGCGAGAAAAGAT
TGTTGGCAACCGCCGAACCGAGCGAGATCTGGCAAGTTAGAAAAATTCCCACTCAGCCAACTTCGTTTAAAAGGAGTGAT
GGGTATGGGGAACACCGTTTCTGGTTTAGTACAAGCCCCGAATGGCACGGTTTACAAAGTGAAACCAGGTCAATACCTCG
GGCGCAATAACGGTAAGGTCACGCATGTTACCCACTCCTATTTGTTGATTAATGAAACCTTGCCCGATGGTTTGGGGTGC
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilP | Vibrio campbellii strain DS40M4 |
82.456 |
100 |
0.825 |
| pilP | Vibrio cholerae strain A1552 |
57.558 |
100 |
0.579 |