Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   GPY20_RS19700 Genome accession   NZ_CP046756
Coordinates   2690010..2690603 (-) Length   197 a.a.
NCBI ID   WP_024374700.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 2015AW-0077     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2685010..2695603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY20_RS19680 - 2685188..2686459 (-) 1272 WP_158130427.1 DUF945 family protein -
  GPY20_RS19685 - 2686689..2688620 (+) 1932 WP_154184561.1 ATP-binding protein -
  GPY20_RS19690 - 2688643..2689140 (+) 498 WP_020327711.1 response regulator -
  GPY20_RS19695 - 2689366..2689914 (+) 549 WP_020327712.1 hypothetical protein -
  GPY20_RS19700 tfoX 2690010..2690603 (-) 594 WP_024374700.1 TfoX/Sxy family DNA transformation protein Regulator
  GPY20_RS19705 - 2690976..2691896 (+) 921 WP_020327714.1 HDOD domain-containing protein -
  GPY20_RS19710 - 2691916..2692821 (+) 906 WP_158130428.1 lysine exporter LysO family protein -
  GPY20_RS19715 - 2692968..2693480 (+) 513 WP_020327716.1 hypothetical protein -
  GPY20_RS19720 panP 2693620..2695263 (+) 1644 WP_158130429.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 23200.67 Da        Isoelectric Point: 7.8116

>NTDB_id=407251 GPY20_RS19700 WP_024374700.1 2690010..2690603(-) (tfoX) [Vibrio fluvialis strain 2015AW-0077]
MDMFEHRFFDYVIKFGTYQKRSMFGGIGLFQQDAMYALLTEDCIFIRGGEDLDEVLTNLGCDKYRHVKKQTTATVNYYDI
TQLFEQNHSELDSIIERSILYSIEQRSFQKSQANRRLRDLPNMQLTLERMVKKAGVDDVETFMRLGAPDVFNKVRRIYGS
DLDVKLLWKFAGAIEGIHWKLLQEPRKRQLLDICHGR

Nucleotide


Download         Length: 594 bp        

>NTDB_id=407251 GPY20_RS19700 WP_024374700.1 2690010..2690603(-) (tfoX) [Vibrio fluvialis strain 2015AW-0077]
ATGGATATGTTTGAGCATAGATTTTTCGATTATGTAATTAAGTTTGGTACCTACCAAAAACGTTCTATGTTTGGTGGTAT
TGGGTTGTTCCAGCAAGACGCGATGTATGCGCTGCTGACAGAAGATTGCATTTTCATTCGCGGCGGCGAAGATCTCGATG
AAGTTTTGACGAATCTTGGCTGTGATAAGTACCGTCATGTGAAGAAGCAGACAACGGCCACCGTTAATTACTACGATATT
ACGCAGTTATTTGAACAGAACCACTCTGAACTGGACTCCATTATTGAACGTTCAATACTGTATTCTATCGAGCAGCGCTC
TTTTCAGAAATCCCAGGCGAACCGTCGTTTGAGGGATTTACCGAATATGCAGTTGACGCTGGAACGAATGGTAAAGAAAG
CGGGCGTTGACGATGTGGAAACATTCATGCGTCTGGGTGCGCCGGATGTGTTTAACAAAGTTCGCCGCATTTATGGCAGC
GATCTGGATGTGAAGTTATTGTGGAAGTTTGCCGGAGCGATTGAAGGAATTCACTGGAAATTGCTGCAAGAGCCGCGTAA
GCGCCAATTGCTCGATATCTGTCACGGTCGTTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(114-192)

TfoX N-terminal domain (TfoX_N)

(12-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

80

98.985

0.792
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

80

98.985

0.792
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

80

98.985

0.792
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

80

98.985

0.792
  tfoX Vibrio cholerae strain A1552

80

98.985

0.792
  tfoX Vibrio campbellii strain DS40M4

67.692

98.985

0.67
  tfoX Vibrio parahaemolyticus RIMD 2210633

67.179

98.985

0.665
  tfoX Aliivibrio fischeri ES114

58.115

96.954

0.563

Multiple sequence alignment