Detailed information NTG0407132

Bioinformatically predicted

Overview

• Name: tfoX
• Type: Regulator
• Locus tag: GPX90_RS06800
• Genome accession: NZ_CP046752
• Coordinates: 415190..415780 (-)
• Length: 196 a.a.
• NCBI ID: WP_005298539.1
• Uniprot ID: A0A2T3QKX1
• Organism: Photobacterium damselae strain 9046-81
• Function: master regulator of natural competence (predicted from homology) Competence regulation

Genomic Context

Location: 410190..420780

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPX90_RS06780	-	410529..412478 (+)	1950	WP_158134978.1	ATP-binding protein	-
GPX90_RS06785	-	412475..412975 (+)	501	WP_036763513.1	response regulator	-
GPX90_RS06790	-	413136..414131 (+)	996	WP_106341027.1	2-hydroxyacid dehydrogenase	-
GPX90_RS06795	dsdC	414154..415086 (-)	933	WP_068947083.1	DNA-binding transcriptional regulator DsdC	-
GPX90_RS06800	tfoX	415190..415780 (-)	591	WP_005298539.1	TfoX/Sxy family DNA transformation protein	Regulator
GPX90_RS06805	-	416330..417244 (+)	915	WP_005298537.1	HDOD domain-containing protein	-
GPX90_RS06810	-	417816..418715 (+)	900	WP_158134980.1	lysine exporter LysO family protein	-
GPX90_RS06815	-	418820..419272 (-)	453	WP_005298533.1	YidB family protein	-
GPX90_RS06820	lysM	419319..419747 (-)	429	WP_086367187.1	peptidoglycan-binding protein LysM	-

Sequence

Protein

• Length: 196 a.a.
• Molecular weight: 22379.86 Da
• Isoelectric Point: 9.5467

>NTDB_id=407132 GPX90_RS06800 WP_005298539.1 415190..415780(-) (tfoX) [Photobacterium damselae strain 9046-81]
MRNIKDEFLNYLNDFGPFEKRSMFGGTGVFVDGAMYAIINNGRIFLRGGETLDDELIGLNCGRFKHVKRSTTAIVNYYDI
TTIYLDNEPKCRDLVNKSIQYACAERNIKFSEDSRRLRDLPNMRLTLERMVKKAGIPDVKSFMSLGAVEVYRKVRRSHGS
GVDVKLLWIFAGAVDGCHWTLLKDEQKSVLLKALNN

Nucleotide

• Length: 591 bp

>NTDB_id=407132 GPX90_RS06800 WP_005298539.1 415190..415780(-) (tfoX) [Photobacterium damselae strain 9046-81]
GTGAGAAATATCAAGGATGAATTTCTTAATTATTTGAATGACTTCGGTCCTTTTGAAAAACGTTCGATGTTCGGTGGAAC
CGGTGTTTTTGTTGATGGTGCTATGTATGCCATTATCAATAACGGTCGAATTTTTTTACGAGGTGGAGAAACGCTAGATG
ACGAATTGATCGGCTTAAACTGTGGAAGATTCAAGCATGTAAAACGTAGCACAACAGCCATTGTTAATTATTATGATATT
ACGACTATTTATCTTGATAATGAGCCTAAATGCCGTGATTTAGTCAATAAATCAATTCAATATGCTTGTGCAGAACGCAA
CATTAAGTTTTCTGAAGACAGTCGTCGCCTTCGTGATCTACCGAATATGCGTTTAACCTTAGAACGCATGGTGAAAAAAG
CTGGGATTCCAGATGTAAAGAGCTTTATGTCATTGGGGGCTGTTGAAGTATACCGTAAAGTTCGTCGCTCTCATGGTAGT
GGTGTTGATGTGAAATTGTTATGGATTTTTGCTGGTGCCGTCGATGGATGCCATTGGACATTACTAAAAGATGAGCAAAA
ATCAGTACTACTAAAAGCATTAAATAACTAA

Domains

Predicted by InterproScan.

• TfoX C-terminal domain (TfoX_C) (114-193)

• TfoX N-terminal domain (TfoX_N) (11-101)

3D structure

• AlphaFold DB: A0A2T3QKX1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
tfoX	Vibrio cholerae O1 biovar El Tor str. N16961	54.688	97.959	0.536
tfoX	Vibrio cholerae O1 biovar El Tor strain DRC-193A	54.688	97.959	0.536
tfoX	Vibrio cholerae O1 biovar El Tor strain P27459	54.688	97.959	0.536
tfoX	Vibrio cholerae O1 biovar El Tor strain E7946	54.688	97.959	0.536
tfoX	Vibrio cholerae strain A1552	54.688	97.959	0.536
tfoX	Vibrio campbellii strain DS40M4	54.891	93.878	0.515
tfoX	Vibrio parahaemolyticus RIMD 2210633	54.348	93.878	0.51
tfoX	Aliivibrio fischeri ES114	48.454	98.98	0.48