Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   GPX93_RS04830 Genome accession   NZ_CP046749
Coordinates   1038115..1038702 (+) Length   195 a.a.
NCBI ID   WP_001005366.1    Uniprot ID   A0A0K9UTP3
Organism   Vibrio cholerae strain 2015V-1118     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1033115..1043702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX93_RS04810 panP 1033437..1035083 (-) 1647 WP_123162560.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  GPX93_RS04815 - 1035193..1035702 (-) 510 WP_000826867.1 hypothetical protein -
  GPX93_RS04820 - 1035891..1036796 (-) 906 WP_000948497.1 lysine exporter LysO family protein -
  GPX93_RS04825 - 1036817..1037737 (-) 921 WP_184482694.1 HDOD domain-containing protein -
  GPX93_RS04830 tfoX 1038115..1038702 (+) 588 WP_001005366.1 TfoX/Sxy family DNA transformation protein Regulator
  GPX93_RS04835 - 1038798..1039346 (-) 549 WP_001232641.1 hypothetical protein -
  GPX93_RS04840 - 1039537..1040034 (-) 498 WP_184482697.1 response regulator -
  GPX93_RS04845 - 1040031..1041986 (-) 1956 WP_089071537.1 ATP-binding protein -
  GPX93_RS04850 - 1042209..1043474 (+) 1266 WP_123162563.1 YdgA family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22816.03 Da        Isoelectric Point: 6.9718

>NTDB_id=407097 GPX93_RS04830 WP_001005366.1 1038115..1038702(+) (tfoX) [Vibrio cholerae strain 2015V-1118]
MNEQQFFDYVTKFGAYQKRSMFGGIGLFQHDAMYVLVSEDRIFVRGGEELDPELLALGCEKYRHVKKQTTATVNYYDITE
LYEQHHPELDSIIERSIQFSVNQREFQRSAASRRLRDLPNMQLTLERMVKKAGIDDVETFMSLGAPEVFNKVRQAYGSDV
DVKLLWKFAGAIEGIHWKLLQEPRKRQLLESCQQR

Nucleotide


Download         Length: 588 bp        

>NTDB_id=407097 GPX93_RS04830 WP_001005366.1 1038115..1038702(+) (tfoX) [Vibrio cholerae strain 2015V-1118]
ATGAATGAGCAACAGTTTTTCGACTACGTAACTAAGTTTGGCGCCTACCAAAAACGCTCGATGTTTGGTGGTATTGGCTT
GTTTCAACACGACGCTATGTATGTGTTGGTCAGTGAAGACCGCATTTTTGTGCGTGGTGGAGAAGAGCTCGACCCTGAGC
TCTTGGCCTTAGGGTGCGAGAAATATCGCCATGTTAAAAAACAGACAACGGCAACCGTAAACTATTACGACATCACTGAA
CTGTATGAGCAGCATCACCCTGAGCTAGACTCGATCATTGAACGCTCGATTCAGTTTTCTGTGAATCAGCGGGAATTTCA
ACGCTCAGCAGCCAGTCGTCGTCTACGGGATTTACCCAATATGCAACTGACTTTGGAGCGCATGGTAAAAAAAGCGGGCA
TTGACGATGTGGAAACTTTTATGAGCCTCGGTGCGCCAGAAGTGTTTAACAAGGTGCGTCAAGCTTATGGAAGTGATGTC
GATGTAAAACTACTGTGGAAGTTTGCGGGTGCGATTGAAGGCATTCACTGGAAACTGCTGCAAGAGCCGCGTAAGCGCCA
ACTGTTAGAAAGTTGTCAGCAGCGTTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(112-190)

TfoX N-terminal domain (TfoX_N)

(9-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K9UTP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

100

100

1
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

100

100

1
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

100

100

1
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

100

100

1
  tfoX Vibrio cholerae strain A1552

100

100

1
  tfoX Vibrio campbellii strain DS40M4

69.43

98.974

0.687
  tfoX Vibrio parahaemolyticus RIMD 2210633

68.394

98.974

0.677
  tfoX Aliivibrio fischeri ES114

59.043

96.41

0.569

Multiple sequence alignment