Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   SSU16085_RS09050 Genome accession   NZ_CP058740
Coordinates   1867153..1869543 (-) Length   796 a.a.
NCBI ID   WP_024394811.1    Uniprot ID   -
Organism   Streptococcus suis strain 16085/3b     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1862153..1874543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU16085_RS09030 (SSU16085_01838) pknB 1862351..1864009 (-) 1659 Protein_1759 Stk1 family PASTA domain-containing Ser/Thr kinase -
  SSU16085_RS09035 (SSU16085_01839) - 1864009..1864746 (-) 738 WP_012774983.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  SSU16085_RS09040 (SSU16085_01840) rsmB 1864784..1866097 (-) 1314 WP_079394053.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  SSU16085_RS09045 (SSU16085_01841) fmt 1866084..1867022 (-) 939 WP_009909423.1 methionyl-tRNA formyltransferase -
  SSU16085_RS09050 (SSU16085_01842) priA 1867153..1869543 (-) 2391 WP_024394811.1 primosomal protein N' Machinery gene
  SSU16085_RS09055 (SSU16085_01843) rpoZ 1869888..1870202 (-) 315 WP_004194153.1 DNA-directed RNA polymerase subunit omega -
  SSU16085_RS09060 (SSU16085_01844) gmk 1870226..1870852 (-) 627 WP_004194155.1 guanylate kinase -
  SSU16085_RS09065 (SSU16085_01845) - 1871007..1872620 (-) 1614 WP_011921986.1 ribonuclease Y -
  SSU16085_RS09070 (SSU16085_01846) - 1872749..1873231 (+) 483 WP_004194159.1 S-ribosylhomocysteine lyase -

Sequence

Protein


Download         Length: 796 a.a.        Molecular weight: 90933.85 Da        Isoelectric Point: 6.4117

>NTDB_id=407060 SSU16085_RS09050 WP_024394811.1 1867153..1869543(-) (priA) [Streptococcus suis strain 16085/3b]
MLAQIIVDVPLMQTDQAYSYRVPAELEEGLKVGVRVHVPFGKGNRLIQGIVVDLIDENDENNLQDLKELAEVLDYSPVLN
QEQFWLADQMRKSVFSYKITLLKSMLPSLLNSSYDKLIRPGLGLEMAEQISLFGDKEQIRFSDLDVTEQGKIMRLAQSGK
ILVDYVAKDKKQIKTEKWYRVCLEKLREADISNRAKKRQQLKKFLLEHSEDQLLSNLKSDYSADTLRYFQEKGYIEVWEE
EVSRTQGVFDKVEKTQALDLNPEQAIAVREIVASIGQESQTFLLQGVTGSGKTEVYLQVIDRVLKMGKTAIMLVPEISLT
PQMTNRFISRFGQQVAILHSGLSDGEKYDEWRKIEAGNAQVVVGARSAIFAPLTNLGVIIIDEEHEATYKQDSNPRYHAR
DVAKLRADYNRATLVLGSATPSLETRARASRGVYGRLTLNQRANPLARIPEVEVVDFRDYIGQQEASNFTPVLIDKIREK
LARKEQVVLMLNRRGYSSFVMCRDCGSVDQCPNCDISLTLHMDTKTMNCHYCGFQKGIPQTCPNCQSRSIRYYGTGTQKA
YDELQELLPEARILRMDVDTTKKKGAHEDLLERFGRGEADILLGTQMIAKGLDFPNVTLVGVLNADTALNLPDFRSSERT
FQLLTQVAGRAGRADKEGEVLIQTYNPNHYAIAFAKEQDYEGFYRYEMGIRKNLGYPPYYFTVGLTFSHKSEEFVVKKAY
EAVAFLRQHLTDAIQILGPTPKPIARTHNLYHYQIILKYRHEDRLEEVLNQILDWTQERENQDLRLIIDNEPQNMM

Nucleotide


Download         Length: 2391 bp        

>NTDB_id=407060 SSU16085_RS09050 WP_024394811.1 1867153..1869543(-) (priA) [Streptococcus suis strain 16085/3b]
ATGTTAGCACAGATTATTGTAGACGTTCCTTTGATGCAGACAGATCAAGCTTATTCCTATCGAGTTCCAGCTGAGTTGGA
AGAGGGGCTCAAGGTTGGCGTGCGTGTCCATGTACCCTTTGGTAAGGGAAATCGGCTGATTCAAGGGATTGTAGTTGACT
TGATTGATGAAAATGACGAAAATAACTTACAAGACTTGAAAGAGCTTGCCGAGGTTTTGGACTATAGTCCTGTTCTTAAT
CAAGAGCAATTTTGGTTGGCAGACCAGATGAGGAAGTCGGTCTTCTCCTATAAAATTACTCTCTTAAAATCCATGCTACC
CAGCTTGCTCAATTCTTCCTATGACAAATTGATCCGTCCAGGGCTTGGTTTGGAAATGGCAGAGCAGATTAGTCTGTTTG
GTGATAAAGAGCAGATTCGTTTTTCTGACTTGGACGTGACAGAGCAAGGGAAAATCATGCGTCTGGCCCAGTCAGGAAAA
ATCTTGGTAGACTATGTGGCCAAGGATAAGAAGCAAATCAAGACAGAAAAATGGTACCGAGTTTGTCTGGAGAAATTACG
AGAAGCAGACATTAGCAATCGGGCTAAAAAACGGCAGCAGTTAAAGAAATTTCTTCTGGAACACTCGGAAGACCAGCTTC
TTTCAAACCTAAAATCGGACTATTCAGCTGATACGCTCCGCTATTTCCAAGAAAAAGGCTATATAGAAGTTTGGGAAGAG
GAAGTGTCGCGAACTCAGGGTGTTTTTGATAAGGTAGAAAAAACGCAGGCCTTGGATTTGAATCCAGAGCAGGCCATTGC
GGTTCGTGAGATTGTGGCCTCTATCGGTCAGGAAAGTCAGACATTTCTACTGCAAGGGGTGACAGGCTCTGGGAAGACGG
AAGTCTATCTCCAGGTTATTGATAGGGTCTTGAAAATGGGGAAAACGGCTATTATGCTGGTGCCTGAAATTTCCTTGACC
CCTCAGATGACCAATCGTTTTATTTCTCGTTTTGGCCAGCAGGTTGCCATTTTACACTCGGGCTTGTCTGATGGTGAGAA
GTACGATGAGTGGCGGAAGATTGAGGCGGGGAATGCCCAGGTGGTTGTCGGGGCCCGTTCGGCCATTTTTGCCCCTTTGA
CAAACTTGGGTGTTATCATCATTGATGAGGAGCATGAAGCGACCTACAAGCAGGACAGCAATCCACGCTATCATGCGCGT
GATGTGGCAAAGTTGCGGGCAGACTATAATCGAGCGACCCTGGTCTTGGGGTCTGCTACGCCGAGTCTTGAAACACGGGC
TCGGGCTAGTCGAGGAGTCTATGGAAGACTGACTCTTAACCAGAGGGCTAATCCATTGGCTCGTATTCCAGAAGTGGAAG
TTGTGGATTTCCGTGATTATATCGGTCAGCAGGAGGCTAGTAATTTTACCCCTGTTCTGATTGATAAGATAAGAGAAAAA
TTGGCTCGTAAGGAACAGGTCGTTCTTATGTTGAATAGGCGTGGTTATTCTTCTTTTGTCATGTGTCGTGATTGCGGTAG
CGTTGACCAGTGTCCCAATTGTGATATTTCCCTAACGCTCCATATGGACACAAAAACGATGAATTGCCATTATTGTGGTT
TTCAAAAGGGGATTCCTCAGACCTGTCCAAACTGTCAAAGTCGTTCTATTCGTTATTATGGGACGGGTACGCAAAAGGCC
TACGATGAATTGCAGGAGCTCTTGCCAGAAGCTAGAATTTTGCGTATGGATGTGGATACTACCAAGAAAAAAGGTGCTCA
TGAGGACTTGCTCGAACGGTTTGGTCGAGGCGAAGCGGATATTCTTCTGGGAACTCAGATGATTGCCAAAGGCTTGGATT
TTCCAAATGTGACCCTAGTTGGCGTGCTCAATGCGGATACGGCTCTGAATTTGCCTGATTTTCGGTCTTCTGAGCGGACC
TTCCAGTTGCTAACTCAGGTAGCTGGTCGGGCTGGTCGAGCTGATAAGGAAGGGGAGGTCCTGATTCAGACCTATAACCC
CAATCATTATGCCATTGCTTTTGCCAAAGAGCAGGATTATGAAGGTTTCTATCGTTATGAGATGGGCATTCGGAAAAATC
TTGGTTATCCACCTTACTATTTTACGGTGGGTCTAACCTTTTCGCACAAGTCAGAAGAATTTGTCGTGAAAAAAGCCTAT
GAAGCTGTAGCCTTTCTCCGTCAACACTTAACAGATGCAATTCAAATCTTGGGACCGACGCCCAAGCCTATTGCCAGAAC
TCATAATCTCTACCACTACCAGATCATCTTGAAATATCGGCATGAAGACCGTTTGGAAGAGGTATTGAATCAGATTTTGG
ATTGGACACAGGAGAGAGAAAATCAAGATTTGCGACTGATTATTGACAATGAACCGCAGAATATGATGTGA

Domains

Predicted by InterProScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(4-107)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(511-536)

Type III restriction enzyme, res subunit (ResIII)

(259-422)

Primosomal protein N C-terminal domain (PriA_C)

(698-792)

Helicase conserved C-terminal domain (Helicase_C)

(570-654)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Bacillus subtilis subsp. subtilis str. 168

47.584

100

0.482

Multiple sequence alignment