Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   SSU16085_RS09100 Genome accession   NZ_CP058740
Coordinates   1877646..1878263 (+) Length   205 a.a.
NCBI ID   WP_004194173.1    Uniprot ID   A0A0H3N278
Organism   Streptococcus suis strain 16085/3b     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1872646..1883263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU16085_RS09070 (SSU16085_01846) - 1872749..1873231 (+) 483 WP_004194159.1 S-ribosylhomocysteine lyase -
  SSU16085_RS09075 (SSU16085_01847) - 1873452..1874906 (-) 1455 WP_024394810.1 cell division site-positioning protein MapZ family protein -
  SSU16085_RS09080 (SSU16085_01848) - 1874916..1876082 (-) 1167 WP_024394809.1 class I SAM-dependent RNA methyltransferase -
  SSU16085_RS09090 (SSU16085_01850) gpsB 1876638..1876973 (-) 336 WP_004194167.1 cell division regulator GpsB -
  SSU16085_RS09095 (SSU16085_01851) - 1877041..1877580 (-) 540 WP_029174574.1 DUF1273 domain-containing protein -
  SSU16085_RS09100 (SSU16085_01852) recU 1877646..1878263 (+) 618 WP_004194173.1 Holliday junction resolvase RecU Machinery gene
  SSU16085_RS09105 (SSU16085_01853) pbp1a 1878244..1880418 (+) 2175 WP_024381720.1 penicillin-binding protein PBP1A -
  SSU16085_RS09110 (SSU16085_01854) rsmG 1880477..1881190 (+) 714 WP_024381721.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  SSU16085_RS09115 (SSU16085_01855) - 1881232..1881435 (-) 204 WP_014637517.1 cold-shock protein -
  SSU16085_RS09120 (SSU16085_01856) - 1881595..1882428 (-) 834 WP_024394808.1 energy-coupling factor transporter transmembrane protein EcfT -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23805.40 Da        Isoelectric Point: 9.9440

>NTDB_id=407061 SSU16085_RS09100 WP_004194173.1 1877646..1878263(+) (recU) [Streptococcus suis strain 16085/3b]
MVNYPHKVSKKINRTSPISSQRVNFANRGMSFEAAINDSNQYYLAHDIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQ
ASTTDYSGVFKRHYIDFEAKETRQKASMPMKNFHAHQIEHMKQVVKQGGICFVLLHFSTLKETYLLPATHLIEFYQVDMG
SKSMPLTFIRQYGFEIQMGRFPSIPYLEIVEKNLLGGESFENYNN

Nucleotide


Download         Length: 618 bp        

>NTDB_id=407061 SSU16085_RS09100 WP_004194173.1 1877646..1878263(+) (recU) [Streptococcus suis strain 16085/3b]
ATGGTCAATTATCCTCATAAGGTGTCAAAAAAAATCAATAGAACCAGTCCTATTTCATCCCAGCGAGTAAACTTTGCTAA
TCGCGGAATGTCTTTTGAGGCCGCTATCAACGATAGCAATCAATATTACCTTGCGCACGATATTGCTGTCATTCACAAGA
AGCCAACTCCCGTGCAAATTGTAAAAGTTGATTACCCCAAACGGAGCCGTGCTAAGATTGTCGAAGCATACTTTCGACAG
GCATCTACCACAGACTACTCTGGTGTTTTTAAAAGACATTATATTGATTTTGAAGCGAAAGAGACACGCCAAAAAGCATC
CATGCCCATGAAAAATTTTCATGCGCATCAGATTGAACACATGAAACAGGTTGTTAAACAAGGTGGTATTTGTTTTGTCC
TTCTTCACTTTTCAACATTAAAAGAAACCTATCTCTTGCCAGCCACTCATTTGATCGAATTTTATCAAGTAGACATGGGT
AGTAAGTCGATGCCTCTAACCTTTATTCGACAATACGGCTTTGAGATTCAAATGGGGCGTTTCCCCAGCATCCCATATCT
GGAAATCGTTGAAAAAAATCTATTAGGTGGTGAATCTTTTGAAAACTACAACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(28-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3N278

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48.744

97.073

0.473

Multiple sequence alignment