Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   SSU16085_RS09015 Genome accession   NZ_CP058740
Coordinates   1859273..1859914 (-) Length   213 a.a.
NCBI ID   WP_024394813.1    Uniprot ID   -
Organism   Streptococcus suis strain 16085/3b     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1854273..1864914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU16085_RS08990 (SSU16085_01830) comFA/cflA 1854427..1855719 (-) 1293 WP_024394375.1 DEAD/DEAH box helicase Machinery gene
  SSU16085_RS08995 (SSU16085_01831) - 1855776..1856408 (+) 633 WP_024394374.1 YigZ family protein -
  SSU16085_RS09000 (SSU16085_01832) cysK 1856498..1857424 (+) 927 WP_029178437.1 cysteine synthase A -
  SSU16085_RS09005 (SSU16085_01833) - 1857450..1857821 (-) 372 WP_024394815.1 S1 RNA-binding domain-containing protein -
  SSU16085_RS09010 (SSU16085_01834) - 1857823..1859223 (-) 1401 WP_024394814.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  SSU16085_RS09015 (SSU16085_01835) vraR 1859273..1859914 (-) 642 WP_024394813.1 response regulator transcription factor Regulator
  SSU16085_RS09020 (SSU16085_01836) - 1859886..1860902 (-) 1017 WP_192062983.1 sensor histidine kinase -
  SSU16085_RS09025 (SSU16085_01837) liaF 1860899..1861558 (-) 660 WP_225533322.1 cell wall-active antibiotics response protein LiaF -
  SSU16085_RS10870 - 1862015..1862287 (-) 273 WP_395387773.1 PASTA domain-containing protein -
  SSU16085_RS09030 (SSU16085_01838) pknB 1862351..1864009 (-) 1659 Protein_1759 Stk1 family PASTA domain-containing Ser/Thr kinase -
  SSU16085_RS09035 (SSU16085_01839) - 1864009..1864746 (-) 738 WP_012774983.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23804.39 Da        Isoelectric Point: 4.8970

>NTDB_id=407059 SSU16085_RS09015 WP_024394813.1 1859273..1859914(-) (vraR) [Streptococcus suis strain 16085/3b]
MNTIRVMLVDDHEMVRLGLKSYLNLQPDVEVVAEASDGEEGLAKALEVKPDVIVMDLVMPKMTGVEATLALLKEWPQAQI
VILTSYLDNEKIYPVLEAGARGYMLKTSSADEILAAIRKVALGEYAIETEVEKKVEHHKRHPDLHDDLTAREREILTLLA
KGYDNQRIADESFISLKTVKTHVSNILSKLAVSDRTQAVVYAFQHGLVAQEDQ

Nucleotide


Download         Length: 642 bp        

>NTDB_id=407059 SSU16085_RS09015 WP_024394813.1 1859273..1859914(-) (vraR) [Streptococcus suis strain 16085/3b]
ATGAATACGATTCGAGTGATGCTGGTTGACGACCATGAGATGGTTCGTCTAGGATTGAAAAGTTACTTAAATTTACAGCC
AGATGTTGAAGTAGTTGCAGAAGCTAGTGATGGCGAGGAAGGTTTGGCTAAAGCATTAGAGGTTAAACCCGATGTTATAG
TGATGGACTTGGTTATGCCCAAGATGACTGGCGTAGAAGCAACCCTGGCCTTGCTGAAGGAATGGCCGCAAGCGCAGATT
GTCATCCTGACCTCCTACCTAGATAATGAAAAAATCTATCCTGTGCTGGAAGCAGGAGCTCGTGGTTATATGTTGAAAAC
GTCAAGTGCTGACGAAATCTTAGCAGCCATCCGCAAGGTAGCTCTTGGAGAATATGCTATTGAGACAGAAGTAGAGAAAA
AAGTAGAGCACCATAAACGCCACCCAGATTTACATGATGACTTGACAGCTCGTGAACGCGAAATCTTGACGCTGTTAGCC
AAGGGATATGATAATCAACGAATTGCAGATGAGTCCTTCATATCCTTAAAAACTGTTAAGACCCATGTTTCCAATATCTT
ATCCAAACTAGCTGTTAGCGATCGTACTCAAGCAGTTGTTTATGCTTTCCAGCATGGTTTGGTGGCGCAAGAGGACCAAT
AG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-202)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

55.072

97.183

0.535
  degU Bacillus subtilis subsp. subtilis str. 168

38.496

100

0.408

Multiple sequence alignment