Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   SSU16085_RS00390 Genome accession   NZ_CP058740
Coordinates   70778..71368 (+) Length   196 a.a.
NCBI ID   WP_015646243.1    Uniprot ID   -
Organism   Streptococcus suis strain 16085/3b     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 65778..76368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU16085_RS00380 (SSU16085_00079) - 67161..68684 (+) 1524 WP_043032926.1 quinol oxidase -
  SSU16085_RS00385 (SSU16085_00081) hexB 68802..70739 (+) 1938 WP_004194473.1 DNA mismatch repair endonuclease MutL Machinery gene
  SSU16085_RS00390 (SSU16085_00082) ruvA 70778..71368 (+) 591 WP_015646243.1 Holliday junction branch migration protein RuvA Machinery gene
  SSU16085_RS00395 (SSU16085_00083) - 71622..72191 (+) 570 WP_024394300.1 DNA-3-methyladenine glycosylase I -
  SSU16085_RS00400 (SSU16085_00084) cinA 72228..73409 (+) 1182 WP_024394301.1 competence/damage-inducible protein A Machinery gene
  SSU16085_RS00405 (SSU16085_00085) recA 73461..74612 (+) 1152 WP_024387809.1 recombinase RecA Machinery gene
  SSU16085_RS00410 (SSU16085_00086) spx 74848..75246 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  SSU16085_RS00415 (SSU16085_00087) - 75346..75612 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  SSU16085_RS00420 (SSU16085_00088) ruvX 75612..76031 (+) 420 WP_032513707.1 Holliday junction resolvase RuvX -
  SSU16085_RS00425 (SSU16085_00089) - 76043..76363 (+) 321 WP_002939343.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21734.09 Da        Isoelectric Point: 5.3292

>NTDB_id=406985 SSU16085_RS00390 WP_015646243.1 70778..71368(+) (ruvA) [Streptococcus suis strain 16085/3b]
MYDYIKGILTKITAKYIVVETHGVGYILQVANPYAYSGQVQQEVTVYTHQVIREDAHLLYGFATENEKSVFLSLISVSGI
GPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKTAQQMILDLEGKFVMSEEAGPVQQVAPSSENIALDEAMEAME
ALGYRPAELKKIKKFFEGTNDTAENYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=406985 SSU16085_RS00390 WP_015646243.1 70778..71368(+) (ruvA) [Streptococcus suis strain 16085/3b]
ATGTACGACTATATTAAAGGAATTTTAACAAAAATAACTGCAAAATACATTGTGGTAGAAACGCATGGAGTAGGCTATAT
CTTGCAGGTTGCTAATCCCTACGCCTATTCAGGACAAGTTCAGCAAGAAGTGACTGTCTATACTCATCAGGTGATTCGTG
AAGACGCTCATTTGCTCTACGGATTTGCTACAGAAAATGAAAAATCCGTCTTTCTGAGTCTGATTTCAGTATCAGGTATT
GGGCCAACAACAGCTCTGGCTATTATTGCTGTTGATGATAATGATGGACTTGTTCGTGCTATTGAGCAGAAAAACATTAC
CTACCTGACCAAGTTTCCAAAGATTGGCAAGAAAACAGCCCAGCAGATGATTTTGGACTTGGAAGGCAAGTTTGTCATGA
GCGAAGAAGCGGGTCCTGTTCAACAAGTAGCACCATCCAGTGAAAATATCGCTCTTGATGAAGCTATGGAAGCCATGGAA
GCTCTTGGCTACCGACCAGCCGAACTCAAGAAAATCAAGAAATTCTTTGAAGGCACCAACGACACCGCAGAAAACTACAT
CAAGTCAGCCCTTAAAATGCTGATGAAGTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

75.635

100

0.76
  ruvA Streptococcus pneumoniae D39

75.635

100

0.76
  ruvA Streptococcus pneumoniae TIGR4

75.635

100

0.76
  ruvA Bacillus subtilis subsp. subtilis str. 168

38.916

100

0.403