Detailed information NTG0406986

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: GPW86_RS18305
• Genome accession: NZ_CP046742
• Coordinates: 2675426..2676850 (-)
• Length: 474 a.a.
• NCBI ID: WP_123011449.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain 3523-03
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2670426..2681850

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPW86_RS18280	purT	2670935..2672110 (-)	1176	WP_162809233.1	phosphoribosylglycinamide formyltransferase 2	-
GPW86_RS18285	-	2672264..2673139 (-)	876	WP_123011448.1	AEC family transporter	-
GPW86_RS18290	cdd	2673298..2674185 (-)	888	WP_001245900.1	cytidine deaminase	-
GPW86_RS18295	-	2674355..2675029 (-)	675	WP_000266239.1	LrgB family protein	-
GPW86_RS18300	-	2675020..2675394 (-)	375	WP_001881007.1	CidA/LrgA family protein	-
GPW86_RS18305	sbcB	2675426..2676850 (-)	1425	WP_123011449.1	exodeoxyribonuclease I	Machinery gene
GPW86_RS18310	-	2676994..2678367 (-)	1374	WP_000117954.1	L-cystine transporter	-
GPW86_RS18315	msrB	2678713..2679159 (+)	447	WP_001959623.1	peptide-methionine (R)-S-oxide reductase MsrB	-
GPW86_RS18320	cobT	2679644..2680669 (+)	1026	WP_175246106.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-
GPW86_RS18325	-	2680669..2681454 (+)	786	WP_000718973.1	adenosylcobinamide-GDP ribazoletransferase	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54544.91 Da
• Isoelectric Point: 6.0792

>NTDB_id=406986 GPW86_RS18305 WP_123011449.1 2675426..2676850(-) (sbcB) [Vibrio cholerae strain 3523-03]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSQGLAEP
EFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAQ
KIGIDREQCLAHLNVIRQHPEVREKLVTVFSQEREFNQESDVDSQLYAGFFSPADRAAMEIIRTTTPENLGSLAIRVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide

• Length: 1425 bp

>NTDB_id=406986 GPW86_RS18305 WP_123011449.1 2675426..2676850(-) (sbcB) [Vibrio cholerae strain 3523-03]
ATGCAGCAAGAACACCAGCCCACCTTCTTCTTCTTTGACTACGAGACTTGGGGAGTCAATCCCGCCAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATCGGTGAGCCTTTGGTAATTTACTGTCAGCTGCCCAACG
ACTATTTACCTGCTCCTGAAGCCGCATTGATCACAGGGATCACTCCTCAAAAAGCCAATAGCCAAGGTCTAGCAGAGCCC
GAATTTATCGCGCGTATTCATGCTGAGCTCTCCACACCCAATACCACCAGCCTAGGTTATAACAGCATACGTTTTGATGA
TGAAGTGACGCGCTACACCTGCTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAACACGGCAATTCCCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATCGAGTGGCCGGAAAATGATGACGGCTTTACC
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCGCACGATGCAATGGCCGATGTGATTGC
CACCATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTGTTCGACTACTTCTTCACTATGCGCCACAAACGCA
AGCTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGCCACTAC
ACCAGCTGGATTGTGCCGATTGCTTGGCATCCGACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCGCTGCTGGAGCTCGATGCCGAAACGCTGCAAGCGCGTCTCTATACGCGGTATGAAGACCTAGCGCCGGATGAGCTAC
CAGTACCCGTGAAATTGGTGCATCTCAATAAATGCCCTATTCTGGCTCCGGCCAAAACCTTGACCGCCGAAAATGCACAA
AAGATTGGTATTGACCGCGAACAGTGTCTCGCGCACTTGAATGTGATTCGTCAACATCCCGAGGTTCGTGAAAAGCTGGT
GACGGTATTTAGCCAAGAGCGCGAATTTAACCAAGAGAGTGATGTGGATAGCCAACTCTATGCCGGCTTTTTCTCCCCAG
CCGATCGCGCGGCGATGGAGATCATCCGCACCACTACACCGGAGAATCTGGGCAGCTTAGCGATCCGGGTGGCAGATAAG
CGCATTGAACCACTGCTGTTTCGTTATCGTGCGCGCCATTATCCCCATACCTTAACCGATGCCGAGCAACGCCGCTGGGC
AGCGCATTGCCGTGACTATTTCGAGCGCAATCTAGAAGGTTATATGTTGAATTTGGAAAATCTGGTGCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCATTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-191)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	98.945	100	0.989