Detailed information NTG0406982

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: SSU16085_RS00350
• Genome accession: NZ_CP058740
• Coordinates: 59690..60691 (+)
• Length: 333 a.a.
• NCBI ID: WP_002935300.1
• Uniprot ID: -
• Organism: Streptococcus suis strain 16085/3b
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 54690..65691

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SSU16085_RS00320 (SSU16085_00065)	-	54743..55321 (+)	579	WP_002935308.1	CPBP family intramembrane glutamic endopeptidase	-
SSU16085_RS00325 (SSU16085_00066)	-	55336..55764 (+)	429	WP_002935307.1	Msa family membrane protein	-
SSU16085_RS00330 (SSU16085_00067)	-	55757..56629 (+)	873	WP_002935305.1	ABC transporter ATP-binding protein	-
SSU16085_RS00335 (SSU16085_00068)	-	56635..57405 (+)	771	WP_002935304.1	membrane protein	-
SSU16085_RS00340 (SSU16085_00069)	-	57408..59120 (+)	1713	WP_002935303.1	ABC transporter ATP-binding protein	-
SSU16085_RS00345 (SSU16085_00070)	-	59222..59395 (+)	174	WP_002935301.1	hypothetical protein	-
SSU16085_RS00350 (SSU16085_00071)	ruvB	59690..60691 (+)	1002	WP_002935300.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
SSU16085_RS00355	-	60759..61401 (+)	643	Protein_51	HAD-IA family hydrolase	-
SSU16085_RS00360 (SSU16085_00074)	comR	61637..62536 (+)	900	WP_024382136.1	helix-turn-helix domain-containing protein	Regulator
SSU16085_RS00365 (SSU16085_00075)	-	62962..64014 (+)	1053	Protein_53	IS110 family transposase	-
SSU16085_RS00370	-	64672..65610 (-)	939	Protein_54	IS4 family transposase	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 37640.15 Da
• Isoelectric Point: 4.4673

>NTDB_id=406982 SSU16085_RS00350 WP_002935300.1 59690..60691(+) (ruvB) [Streptococcus suis strain 16085/3b]
MTNRILDMEQMQDEEYVERTLRPQKLNEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN
IKQTSGPVIEKAGDLVALLNDLEPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAGEASRSVHLELPPFTLIGATT
RAGMLSNPLRARFGITGHMEYYELADLTEIVERTADIFDMEITHEAAIELARRSRGTPRIANRLLKRVRDFAQIMGDGLI
DDNITDKALTMLDVDREGLDYVDQKILRTMIEMYGGGPVGLNTLSVNIAEERETVEDMYEPYLIQQGFLMRTRTGRVATA
KAYEHLGYPYTEK

Nucleotide

• Length: 1002 bp

>NTDB_id=406982 SSU16085_RS00350 WP_002935300.1 59690..60691(+) (ruvB) [Streptococcus suis strain 16085/3b]
ATGACAAATCGAATTTTAGATATGGAACAAATGCAGGACGAGGAGTATGTTGAGCGTACCCTGCGTCCGCAGAAATTAAA
TGAATACATCGGTCAGGATAAGGTCAAGGACCAGCTCAAAATCTTTATCGAGGCGGCCAAGCTCCGTGATGAAGCCTTGG
ACCATACCCTTCTTTTTGGCCCACCGGGTCTGGGGAAGACCACCATGGCCTTTGTCATTGCCAACGAATTGGGCGTCAAT
ATCAAGCAGACCAGTGGTCCTGTTATTGAAAAAGCGGGTGACTTGGTGGCCCTTCTCAACGACTTGGAGCCTGGCGACGT
CCTCTTTATCGATGAAATCCACCGTATGCCCATGGCGGTCGAGGAAATTCTCTACTCTGCTATGGAGGATTTCTACATCG
ACATTATGATTGGAGCAGGGGAGGCCAGTCGCTCCGTGCATTTGGAGTTGCCACCGTTTACCCTGATTGGAGCAACCACT
CGTGCGGGTATGCTATCCAATCCTCTGCGGGCCCGTTTTGGTATTACCGGTCATATGGAGTATTATGAACTGGCTGATTT
GACGGAGATTGTCGAGCGAACAGCGGACATCTTTGACATGGAGATTACTCATGAAGCTGCTATTGAGCTGGCTCGTCGGT
CTCGTGGAACTCCCCGTATCGCCAACCGCTTGCTCAAGCGGGTGCGGGATTTCGCACAGATTATGGGAGACGGCCTGATT
GATGATAACATTACGGACAAGGCCCTGACCATGCTGGATGTGGACCGCGAGGGGCTGGACTACGTGGACCAGAAGATTCT
CCGCACCATGATTGAGATGTACGGCGGCGGTCCCGTCGGCCTCAACACTCTGTCGGTCAATATTGCCGAGGAGCGTGAGA
CGGTGGAGGACATGTACGAACCTTACCTGATTCAGCAGGGCTTCCTCATGCGGACACGGACGGGGCGGGTTGCGACAGCC
AAGGCTTACGAGCACTTGGGTTATCCCTATACGGAAAAATAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

• RuvB AAA lid domain (AAA_lid_4) (182-255)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	90.332	99.399	0.898
ruvB	Streptococcus pneumoniae R6	90.03	99.399	0.895
ruvB	Streptococcus pneumoniae D39	90.03	99.399	0.895
ruvB	Bacillus subtilis subsp. subtilis str. 168	58.589	97.898	0.574
ruvB	Helicobacter pylori 26695	51.368	98.799	0.508
ruvB	Synechocystis sp. PCC 6803	50.479	93.994	0.474