Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | GPW86_RS11430 | Genome accession | NZ_CP046742 |
| Coordinates | 1218208..1218798 (-) | Length | 196 a.a. |
| NCBI ID | WP_000157688.1 | Uniprot ID | A0A655VUM8 |
| Organism | Vibrio cholerae strain 3523-03 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1213208..1223798
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPW86_RS11410 | aroB | 1214135..1215220 (-) | 1086 | WP_069504185.1 | 3-dehydroquinate synthase | - |
| GPW86_RS11415 | aroK | 1215248..1215772 (-) | 525 | WP_000818616.1 | shikimate kinase AroK | - |
| GPW86_RS11420 | pilQ | 1215959..1217674 (-) | 1716 | WP_000788428.1 | type IV pilus secretin PilQ | Machinery gene |
| GPW86_RS11425 | pilP | 1217700..1218218 (-) | 519 | WP_123011174.1 | pilus assembly protein PilP | Machinery gene |
| GPW86_RS11430 | pilO | 1218208..1218798 (-) | 591 | WP_000157688.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| GPW86_RS11435 | pilN | 1218791..1219375 (-) | 585 | WP_184476137.1 | PilN domain-containing protein | Machinery gene |
| GPW86_RS11440 | pilM | 1219365..1220381 (-) | 1017 | WP_123011176.1 | type IV pilus assembly protein PilM | Machinery gene |
| GPW86_RS11445 | - | 1220524..1223001 (+) | 2478 | WP_057555154.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 22891.30 Da Isoelectric Point: 4.4169
>NTDB_id=406961 GPW86_RS11430 WP_000157688.1 1218208..1218798(-) (pilO) [Vibrio cholerae strain 3523-03]
MASLQELELDEISEWPLLPQLLVILLIMLLIQGAGYWFYLMPKQDEIALLKQEEETVKATLRIKANKVAVLPQIQAQLDE
LKERYDFLLRQLPVQKELASMLASVNQLGLDSSLTFTRIDWGERESQEFLYRLPLNIELTGSYHDIGDFSQAIAKLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKQEVDDEK
MASLQELELDEISEWPLLPQLLVILLIMLLIQGAGYWFYLMPKQDEIALLKQEEETVKATLRIKANKVAVLPQIQAQLDE
LKERYDFLLRQLPVQKELASMLASVNQLGLDSSLTFTRIDWGERESQEFLYRLPLNIELTGSYHDIGDFSQAIAKLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKQEVDDEK
Nucleotide
Download Length: 591 bp
>NTDB_id=406961 GPW86_RS11430 WP_000157688.1 1218208..1218798(-) (pilO) [Vibrio cholerae strain 3523-03]
ATGGCTAGTTTGCAAGAGCTAGAACTGGATGAAATTAGTGAATGGCCGCTGCTGCCTCAGCTGCTGGTGATTCTGCTTAT
CATGCTACTGATCCAAGGTGCTGGTTATTGGTTCTATCTCATGCCCAAACAAGACGAGATTGCGCTGTTAAAGCAGGAAG
AGGAAACCGTCAAGGCCACACTGCGCATCAAAGCCAATAAAGTGGCGGTATTGCCGCAGATTCAAGCTCAGTTGGATGAG
CTCAAAGAGCGTTACGATTTTTTACTGCGCCAGCTACCGGTGCAAAAAGAGTTAGCCAGCATGCTGGCGTCAGTCAACCA
GCTTGGGCTCGATAGTTCGCTTACCTTTACGCGGATTGATTGGGGGGAGCGTGAAAGCCAAGAGTTTCTTTACCGCTTAC
CGCTCAATATCGAACTGACGGGAAGCTATCACGATATTGGCGATTTTTCGCAAGCGATTGCCAAGTTACCGCGCATCATC
AACTTCGACGATGTGGACTGGCAGCGGGTCAGCCAAGAGAGTAGCACGCTGCACTTTCGAGTTAGAGCCTACACCTACCA
ATTTAAGCAGGAGGTGGATGATGAAAAATAA
ATGGCTAGTTTGCAAGAGCTAGAACTGGATGAAATTAGTGAATGGCCGCTGCTGCCTCAGCTGCTGGTGATTCTGCTTAT
CATGCTACTGATCCAAGGTGCTGGTTATTGGTTCTATCTCATGCCCAAACAAGACGAGATTGCGCTGTTAAAGCAGGAAG
AGGAAACCGTCAAGGCCACACTGCGCATCAAAGCCAATAAAGTGGCGGTATTGCCGCAGATTCAAGCTCAGTTGGATGAG
CTCAAAGAGCGTTACGATTTTTTACTGCGCCAGCTACCGGTGCAAAAAGAGTTAGCCAGCATGCTGGCGTCAGTCAACCA
GCTTGGGCTCGATAGTTCGCTTACCTTTACGCGGATTGATTGGGGGGAGCGTGAAAGCCAAGAGTTTCTTTACCGCTTAC
CGCTCAATATCGAACTGACGGGAAGCTATCACGATATTGGCGATTTTTCGCAAGCGATTGCCAAGTTACCGCGCATCATC
AACTTCGACGATGTGGACTGGCAGCGGGTCAGCCAAGAGAGTAGCACGCTGCACTTTCGAGTTAGAGCCTACACCTACCA
ATTTAAGCAGGAGGTGGATGATGAAAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio cholerae strain A1552 |
99.49 |
100 |
0.995 |
| pilO | Vibrio campbellii strain DS40M4 |
71.429 |
96.429 |
0.689 |