Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   HYO64_RS03675 Genome accession   NZ_CP058729
Coordinates   743657..744172 (-) Length   171 a.a.
NCBI ID   WP_114154832.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain M164-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 738657..749172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYO64_RS03650 - 739203..740846 (+) 1644 WP_072688683.1 nitrite/sulfite reductase -
  HYO64_RS03655 - 740839..741324 (+) 486 WP_000935247.1 DUF934 domain-containing protein -
  HYO64_RS03660 - 741406..741759 (+) 354 WP_000457785.1 DMT family transporter -
  HYO64_RS03665 - 741802..742245 (-) 444 WP_001176580.1 VOC family protein -
  HYO64_RS03670 - 742373..743548 (-) 1176 WP_114154834.1 thiolase family protein -
  HYO64_RS03675 fimT 743657..744172 (-) 516 WP_114154832.1 GspH/FimT family pseudopilin Machinery gene
  HYO64_RS03680 omp38 744554..745624 (+) 1071 WP_000777878.1 outer membrane protein Omp38 -
  HYO64_RS03685 - 745749..745892 (-) 144 WP_162138624.1 hypothetical protein -
  HYO64_RS03690 - 745911..747116 (-) 1206 WP_000512698.1 RtcB family protein -
  HYO64_RS03695 - 747393..748853 (-) 1461 WP_000004971.1 amino acid permease -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19649.88 Da        Isoelectric Point: 8.8037

>NTDB_id=406923 HYO64_RS03675 WP_114154832.1 743657..744172(-) (fimT) [Acinetobacter baumannii strain M164-3]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGNSGLPIESNGSFIYCSYDQLKNYKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=406923 HYO64_RS03675 WP_114154832.1 743657..744172(-) (fimT) [Acinetobacter baumannii strain M164-3]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAATTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTATAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427

Multiple sequence alignment