Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   GPW70_RS13645 Genome accession   NZ_CP046740
Coordinates   1921146..1921730 (-) Length   194 a.a.
NCBI ID   WP_032473037.1    Uniprot ID   -
Organism   Vibrio cholerae strain 3566-06     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1916146..1926730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW70_RS13625 - 1916374..1917639 (-) 1266 WP_000835928.1 YdgA family protein -
  GPW70_RS13630 - 1917862..1919817 (+) 1956 WP_002147896.1 ATP-binding protein -
  GPW70_RS13635 - 1919814..1920311 (+) 498 WP_001031964.1 response regulator -
  GPW70_RS13640 - 1920502..1921050 (+) 549 WP_001232641.1 hypothetical protein -
  GPW70_RS13645 tfoX 1921146..1921730 (-) 585 WP_032473037.1 TfoX/Sxy family DNA transformation protein Regulator
  GPW70_RS13650 - 1922108..1923028 (+) 921 WP_000019000.1 HDOD domain-containing protein -
  GPW70_RS13655 - 1923049..1923954 (+) 906 WP_000948497.1 lysine exporter LysO family protein -
  GPW70_RS13660 - 1924143..1924652 (+) 510 WP_000826868.1 hypothetical protein -
  GPW70_RS13665 panP 1924762..1926408 (+) 1647 WP_000253193.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22659.84 Da        Isoelectric Point: 6.6454

>NTDB_id=406923 GPW70_RS13645 WP_032473037.1 1921146..1921730(-) (tfoX) [Vibrio cholerae strain 3566-06]
MNEQQFFDYVTKFGAYQKRSMFGGIGLFQHDAMYVLVSEDRIFVRGGEELDPELLALGCEKYRHVKKQTTATVNYYDITE
LYEQHHPELDSIIERSIQFSVNQREFQRSAASRLRDLPNMQLTLERMVKKAGIDDVETFMSLGAPEVFNKVRQAYGSDVD
VKLLWKFAGAIEGIHWKLLQEPRKRQLLESCQQR

Nucleotide


Download         Length: 585 bp        

>NTDB_id=406923 GPW70_RS13645 WP_032473037.1 1921146..1921730(-) (tfoX) [Vibrio cholerae strain 3566-06]
ATGAATGAGCAACAGTTTTTCGACTACGTAACTAAGTTTGGCGCCTACCAAAAACGCTCGATGTTTGGTGGTATTGGCTT
GTTTCAACACGACGCTATGTATGTGTTGGTCAGTGAAGACCGCATTTTTGTGCGTGGTGGAGAAGAGCTCGACCCTGAGC
TCTTGGCCTTAGGGTGCGAGAAATATCGCCATGTTAAAAAACAGACAACGGCAACCGTAAACTATTACGACATCACTGAA
CTGTATGAGCAACATCACCCTGAGCTAGACTCGATCATTGAACGCTCGATTCAGTTTTCTGTGAATCAGCGGGAATTTCA
ACGCTCAGCAGCCAGTCGTCTACGGGATTTACCCAATATGCAACTGACTTTGGAGCGTATGGTAAAAAAAGCGGGCATTG
ACGATGTGGAAACTTTTATGAGCCTCGGTGCGCCAGAAGTGTTTAACAAGGTGCGTCAAGCTTATGGAAGTGATGTCGAT
GTAAAACTACTGTGGAAGTTTGCAGGTGCGATTGAAGGCATTCACTGGAAACTGCTGCAAGAGCCGCGTAAGCGCCAACT
GTTAGAAAGTTGTCAGCAGCGTTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(112-189)

TfoX N-terminal domain (TfoX_N)

(9-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

99.487

100

1
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

99.487

100

1
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

99.487

100

1
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

99.487

100

1
  tfoX Vibrio cholerae strain A1552

99.487

100

1
  tfoX Vibrio campbellii strain DS40M4

68.912

99.485

0.686
  tfoX Vibrio parahaemolyticus RIMD 2210633

68.394

99.485

0.68
  tfoX Aliivibrio fischeri ES114

58.511

96.907

0.567

Multiple sequence alignment