Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | GPW74_RS08380 | Genome accession | NZ_CP046737 |
| Coordinates | 1869604..1870194 (-) | Length | 196 a.a. |
| NCBI ID | WP_000157690.1 | Uniprot ID | A0A366AJW1 |
| Organism | Vibrio cholerae strain 2015V-1126 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1864604..1875194
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPW74_RS08360 | aroB | 1865531..1866616 (-) | 1086 | WP_000439803.1 | 3-dehydroquinate synthase | - |
| GPW74_RS08365 | aroK | 1866644..1867168 (-) | 525 | WP_000818616.1 | shikimate kinase AroK | - |
| GPW74_RS08370 | pilQ | 1867355..1869070 (-) | 1716 | WP_162806863.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| GPW74_RS08375 | pilP | 1869096..1869614 (-) | 519 | WP_000792032.1 | pilus assembly protein PilP | Machinery gene |
| GPW74_RS08380 | pilO | 1869604..1870194 (-) | 591 | WP_000157690.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| GPW74_RS08385 | pilN | 1870187..1870771 (-) | 585 | WP_172776179.1 | PilN domain-containing protein | Machinery gene |
| GPW74_RS08390 | pilM | 1870761..1871777 (-) | 1017 | WP_123012524.1 | type IV pilus assembly protein PilM | Machinery gene |
| GPW74_RS08395 | - | 1871920..1874397 (+) | 2478 | WP_162813371.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 22877.27 Da Isoelectric Point: 4.4169
>NTDB_id=406865 GPW74_RS08380 WP_000157690.1 1869604..1870194(-) (pilO) [Vibrio cholerae strain 2015V-1126]
MASLQELELDEISEWPLLPQLVVILLIMLLIQGAGYWFYLMPKQDEIALLKQEEETVKATLRIKANKVAVLPQIQAQLDE
LKERYDFLLRQLPVQKELASMLASVNQLGLDSSLTFTRIDWGERESQEFLYRLPLNIELTGSYHDIGDFSQAIAKLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKQEVDDEK
MASLQELELDEISEWPLLPQLVVILLIMLLIQGAGYWFYLMPKQDEIALLKQEEETVKATLRIKANKVAVLPQIQAQLDE
LKERYDFLLRQLPVQKELASMLASVNQLGLDSSLTFTRIDWGERESQEFLYRLPLNIELTGSYHDIGDFSQAIAKLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKQEVDDEK
Nucleotide
Download Length: 591 bp
>NTDB_id=406865 GPW74_RS08380 WP_000157690.1 1869604..1870194(-) (pilO) [Vibrio cholerae strain 2015V-1126]
ATGGCTAGTCTACAAGAGCTAGAACTGGATGAAATCAGTGAATGGCCGCTGCTGCCTCAGTTGGTGGTGATTCTGCTTAT
CATGCTACTGATCCAAGGTGCTGGTTATTGGTTCTATCTCATGCCCAAACAAGACGAGATTGCGCTGTTAAAGCAGGAAG
AGGAAACCGTCAAGGCGACACTGCGCATCAAAGCCAATAAAGTGGCGGTATTGCCGCAGATCCAAGCTCAGTTGGACGAG
CTCAAAGAGCGTTACGATTTTTTACTGCGCCAGCTACCGGTGCAAAAAGAGTTAGCCAGCATGCTGGCGTCAGTCAACCA
GCTTGGGCTCGATAGTTCGCTTACCTTTACGCGGATTGATTGGGGGGAGCGTGAAAGCCAAGAGTTTCTTTACCGCTTAC
CGCTCAATATCGAACTGACGGGAAGCTATCACGATATTGGCGATTTTTCGCAAGCGATTGCCAAGTTACCGCGCATCATC
AACTTCGACGATGTGGACTGGCAGCGTGTCAGCCAAGAGAGTAGCACGCTGCACTTTCGAGTCAGAGCCTACACCTACCA
ATTTAAGCAGGAGGTGGATGATGAAAAATAA
ATGGCTAGTCTACAAGAGCTAGAACTGGATGAAATCAGTGAATGGCCGCTGCTGCCTCAGTTGGTGGTGATTCTGCTTAT
CATGCTACTGATCCAAGGTGCTGGTTATTGGTTCTATCTCATGCCCAAACAAGACGAGATTGCGCTGTTAAAGCAGGAAG
AGGAAACCGTCAAGGCGACACTGCGCATCAAAGCCAATAAAGTGGCGGTATTGCCGCAGATCCAAGCTCAGTTGGACGAG
CTCAAAGAGCGTTACGATTTTTTACTGCGCCAGCTACCGGTGCAAAAAGAGTTAGCCAGCATGCTGGCGTCAGTCAACCA
GCTTGGGCTCGATAGTTCGCTTACCTTTACGCGGATTGATTGGGGGGAGCGTGAAAGCCAAGAGTTTCTTTACCGCTTAC
CGCTCAATATCGAACTGACGGGAAGCTATCACGATATTGGCGATTTTTCGCAAGCGATTGCCAAGTTACCGCGCATCATC
AACTTCGACGATGTGGACTGGCAGCGTGTCAGCCAAGAGAGTAGCACGCTGCACTTTCGAGTCAGAGCCTACACCTACCA
ATTTAAGCAGGAGGTGGATGATGAAAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio cholerae strain A1552 |
100 |
100 |
1 |
| pilO | Vibrio campbellii strain DS40M4 |
71.958 |
96.429 |
0.694 |