Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   GPW74_RS08375 Genome accession   NZ_CP046737
Coordinates   1869096..1869614 (-) Length   172 a.a.
NCBI ID   WP_000792032.1    Uniprot ID   -
Organism   Vibrio cholerae strain 2015V-1126     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1864096..1874614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW74_RS08360 aroB 1865531..1866616 (-) 1086 WP_000439803.1 3-dehydroquinate synthase -
  GPW74_RS08365 aroK 1866644..1867168 (-) 525 WP_000818616.1 shikimate kinase AroK -
  GPW74_RS08370 pilQ 1867355..1869070 (-) 1716 WP_162806863.1 type IV pilus secretin PilQ family protein Machinery gene
  GPW74_RS08375 pilP 1869096..1869614 (-) 519 WP_000792032.1 pilus assembly protein PilP Machinery gene
  GPW74_RS08380 pilO 1869604..1870194 (-) 591 WP_000157690.1 type 4a pilus biogenesis protein PilO Machinery gene
  GPW74_RS08385 pilN 1870187..1870771 (-) 585 WP_172776179.1 PilN domain-containing protein Machinery gene
  GPW74_RS08390 pilM 1870761..1871777 (-) 1017 WP_123012524.1 type IV pilus assembly protein PilM Machinery gene
  GPW74_RS08395 - 1871920..1874397 (+) 2478 WP_162813371.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19084.25 Da        Isoelectric Point: 10.0857

>NTDB_id=406864 GPW74_RS08375 WP_000792032.1 1869096..1869614(-) (pilP) [Vibrio cholerae strain 2015V-1126]
MKNKPLGLWLMSLLVLVGCKANQDDLTSYVAQVEREARKEVTKLKPILEFEATPYQQHKGREPFVLPKEALVQNQPLAKA
DCWQPVPRAKNGPLERYPLHQLRLKGVMSSGGSISALVQTPAGSVVKVKAGQYVGINNGKVTRVDDNYLLINETLPDGLG
CWNQRNVKLALK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=406864 GPW74_RS08375 WP_000792032.1 1869096..1869614(-) (pilP) [Vibrio cholerae strain 2015V-1126]
ATGAAAAATAAGCCACTTGGATTATGGCTGATGAGTTTGCTGGTGTTGGTCGGGTGTAAGGCGAACCAAGATGATTTGAC
CTCATACGTCGCGCAAGTTGAGCGTGAAGCGCGCAAAGAAGTGACTAAGCTCAAACCCATTTTAGAGTTTGAAGCCACGC
CCTATCAGCAGCACAAGGGGCGTGAGCCGTTTGTCTTACCGAAAGAAGCGTTAGTGCAAAACCAACCGCTGGCCAAAGCC
GACTGTTGGCAACCCGTGCCACGTGCGAAAAATGGGCCGTTGGAGCGTTATCCATTGCACCAATTGCGCTTAAAAGGAGT
GATGAGCAGCGGGGGCAGTATCTCTGCCTTAGTGCAAACGCCGGCAGGGAGTGTGGTCAAGGTTAAGGCAGGTCAATATG
TCGGAATCAATAATGGCAAAGTCACCCGAGTCGACGACAACTATTTGTTAATTAATGAAACTTTGCCTGATGGCTTAGGG
TGTTGGAATCAGCGTAACGTCAAGCTGGCTTTAAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

100

100

1
  pilP Vibrio campbellii strain DS40M4

56.395

100

0.564

Multiple sequence alignment