Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | GPW66_RS08835 | Genome accession | NZ_CP046736 |
| Coordinates | 867983..868567 (+) | Length | 194 a.a. |
| NCBI ID | WP_142541178.1 | Uniprot ID | - |
| Organism | Vibrio cholerae strain 3528-08 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 862983..873567
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPW66_RS08820 | oxyR | 863388..864281 (+) | 894 | WP_001025909.1 | DNA-binding transcriptional regulator OxyR | - |
| GPW66_RS08825 | - | 864357..866834 (-) | 2478 | WP_000668738.1 | penicillin-binding protein 1A | - |
| GPW66_RS08830 | pilM | 866977..867993 (+) | 1017 | WP_158106336.1 | type IV pilus assembly protein PilM | Machinery gene |
| GPW66_RS08835 | pilN | 867983..868567 (+) | 585 | WP_142541178.1 | PilN domain-containing protein | Machinery gene |
| GPW66_RS08840 | pilO | 868560..869150 (+) | 591 | WP_000157690.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| GPW66_RS08845 | pilP | 869140..869658 (+) | 519 | WP_158106600.1 | pilus assembly protein PilP | Machinery gene |
| GPW66_RS08850 | pilQ | 869684..871399 (+) | 1716 | WP_199244755.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| GPW66_RS08855 | aroK | 871586..872110 (+) | 525 | WP_000818616.1 | shikimate kinase AroK | - |
| GPW66_RS08860 | aroB | 872138..873223 (+) | 1086 | WP_071181328.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 194 a.a. Molecular weight: 21992.43 Da Isoelectric Point: 9.7294
>NTDB_id=406827 GPW66_RS08835 WP_142541178.1 867983..868567(+) (pilN) [Vibrio cholerae strain 3528-08]
MLHKVNLLPWRDARREAHKRRFLGLVTLGVLLAVLMQFAAGEYLGGQMALQQERIGYLQQHIFSLDQQIAKLKIAEEEHK
ALLTRLAVVEQLQQKRNKTTEFMNQMPNLIPEGVYVDKIKMNGHQIEITGISDSTARLATMLDNLEKSDKLTDVEMHEIV
SGNKRFGKQFQSFKVSFQILTPASNPQEGGAHNG
MLHKVNLLPWRDARREAHKRRFLGLVTLGVLLAVLMQFAAGEYLGGQMALQQERIGYLQQHIFSLDQQIAKLKIAEEEHK
ALLTRLAVVEQLQQKRNKTTEFMNQMPNLIPEGVYVDKIKMNGHQIEITGISDSTARLATMLDNLEKSDKLTDVEMHEIV
SGNKRFGKQFQSFKVSFQILTPASNPQEGGAHNG
Nucleotide
Download Length: 585 bp
>NTDB_id=406827 GPW66_RS08835 WP_142541178.1 867983..868567(+) (pilN) [Vibrio cholerae strain 3528-08]
ATGTTGCATAAGGTCAACTTACTGCCGTGGCGTGATGCACGGCGTGAAGCACATAAGCGGCGCTTTTTGGGGTTAGTGAC
ACTCGGTGTTTTGCTGGCGGTGTTGATGCAATTTGCCGCAGGCGAATACTTGGGCGGACAAATGGCTTTGCAGCAAGAGC
GGATTGGTTATTTGCAACAACATATTTTCTCGCTGGATCAGCAGATCGCTAAGTTGAAGATCGCTGAAGAAGAACATAAG
GCGTTATTGACCCGTTTGGCAGTGGTGGAGCAACTGCAGCAAAAGCGCAATAAAACGACTGAGTTTATGAACCAAATGCC
CAACCTGATCCCTGAAGGCGTCTATGTCGACAAGATCAAGATGAATGGCCATCAGATAGAAATAACCGGGATTAGCGATT
CCACCGCTCGCTTGGCAACCATGCTCGATAACTTGGAGAAGTCGGACAAATTAACCGATGTTGAAATGCATGAAATCGTT
TCAGGGAATAAGCGATTTGGTAAGCAATTTCAGAGCTTTAAAGTCTCCTTCCAAATTTTAACCCCAGCCTCTAACCCGCA
AGAGGGAGGTGCACACAATGGCTAG
ATGTTGCATAAGGTCAACTTACTGCCGTGGCGTGATGCACGGCGTGAAGCACATAAGCGGCGCTTTTTGGGGTTAGTGAC
ACTCGGTGTTTTGCTGGCGGTGTTGATGCAATTTGCCGCAGGCGAATACTTGGGCGGACAAATGGCTTTGCAGCAAGAGC
GGATTGGTTATTTGCAACAACATATTTTCTCGCTGGATCAGCAGATCGCTAAGTTGAAGATCGCTGAAGAAGAACATAAG
GCGTTATTGACCCGTTTGGCAGTGGTGGAGCAACTGCAGCAAAAGCGCAATAAAACGACTGAGTTTATGAACCAAATGCC
CAACCTGATCCCTGAAGGCGTCTATGTCGACAAGATCAAGATGAATGGCCATCAGATAGAAATAACCGGGATTAGCGATT
CCACCGCTCGCTTGGCAACCATGCTCGATAACTTGGAGAAGTCGGACAAATTAACCGATGTTGAAATGCATGAAATCGTT
TCAGGGAATAAGCGATTTGGTAAGCAATTTCAGAGCTTTAAAGTCTCCTTCCAAATTTTAACCCCAGCCTCTAACCCGCA
AGAGGGAGGTGCACACAATGGCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio cholerae strain A1552 |
98.969 |
100 |
0.99 |
| pilN | Vibrio campbellii strain DS40M4 |
60.452 |
91.237 |
0.552 |