Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   GPW66_RS08845 Genome accession   NZ_CP046736
Coordinates   869140..869658 (+) Length   172 a.a.
NCBI ID   WP_158106600.1    Uniprot ID   -
Organism   Vibrio cholerae strain 3528-08     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 864140..874658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW66_RS08825 - 864357..866834 (-) 2478 WP_000668738.1 penicillin-binding protein 1A -
  GPW66_RS08830 pilM 866977..867993 (+) 1017 WP_158106336.1 type IV pilus assembly protein PilM Machinery gene
  GPW66_RS08835 pilN 867983..868567 (+) 585 WP_142541178.1 PilN domain-containing protein Machinery gene
  GPW66_RS08840 pilO 868560..869150 (+) 591 WP_000157690.1 type 4a pilus biogenesis protein PilO Machinery gene
  GPW66_RS08845 pilP 869140..869658 (+) 519 WP_158106600.1 pilus assembly protein PilP Machinery gene
  GPW66_RS08850 pilQ 869684..871399 (+) 1716 WP_199244755.1 type IV pilus secretin PilQ family protein Machinery gene
  GPW66_RS08855 aroK 871586..872110 (+) 525 WP_000818616.1 shikimate kinase AroK -
  GPW66_RS08860 aroB 872138..873223 (+) 1086 WP_071181328.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19114.28 Da        Isoelectric Point: 10.0857

>NTDB_id=406829 GPW66_RS08845 WP_158106600.1 869140..869658(+) (pilP) [Vibrio cholerae strain 3528-08]
MKNKPLGLWLMSLLVLVGCKANQDDLTSYVAQVEREARKEVTKLKPILEFETTPYQQHKGREPFVLPKEALVQNQPLAKA
DCWQPVPRAKNGPLERYPLHQLRLKGVMSSGGSISALVQTPAGSVVKVKAGQYVGINNGKVTRVDDNYLLINETLPDGLG
CWNQRNVKLALK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=406829 GPW66_RS08845 WP_158106600.1 869140..869658(+) (pilP) [Vibrio cholerae strain 3528-08]
ATGAAAAATAAACCGCTTGGATTATGGCTGATGAGTTTGCTGGTGTTGGTCGGGTGTAAGGCGAACCAAGATGATTTGAC
CTCATACGTCGCGCAAGTTGAGCGTGAAGCGCGCAAAGAAGTGACTAAGCTCAAACCCATTTTAGAGTTTGAAACCACGC
CCTATCAGCAGCACAAGGGGCGTGAGCCGTTTGTCTTACCGAAAGAAGCGTTAGTGCAAAACCAACCGCTAGCCAAAGCC
GACTGTTGGCAACCCGTGCCACGTGCGAAAAATGGGCCGTTGGAGCGTTATCCATTGCACCAATTGCGCTTAAAAGGGGT
GATGAGCAGCGGGGGCAGTATCTCTGCCTTAGTGCAAACGCCGGCAGGGAGTGTGGTCAAGGTTAAGGCAGGTCAATATG
TCGGAATCAATAATGGCAAAGTCACCCGAGTCGACGACAACTATTTGTTAATTAATGAAACTTTGCCTGATGGCTTAGGG
TGTTGGAATCAGCGTAACGTCAAGCTGGCTTTAAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

99.419

100

0.994
  pilP Vibrio campbellii strain DS40M4

56.395

100

0.564

Multiple sequence alignment