Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GPW66_RS05845 Genome accession   NZ_CP046736
Coordinates   243582..244118 (-) Length   178 a.a.
NCBI ID   WP_001887866.1    Uniprot ID   -
Organism   Vibrio cholerae strain 3528-08     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 238582..249118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW66_RS05825 - 239037..239354 (-) 318 WP_001887862.1 MSHA biogenesis protein MshK -
  GPW66_RS05830 gspM 239347..239997 (-) 651 WP_001887863.1 type II secretion system protein GspM -
  GPW66_RS05835 - 239994..241433 (-) 1440 WP_001887864.1 PilN domain-containing protein -
  GPW66_RS05840 csrD 241446..243404 (-) 1959 WP_229767295.1 RNase E specificity factor CsrD -
  GPW66_RS05845 ssb 243582..244118 (-) 537 WP_001887866.1 single-stranded DNA-binding protein Machinery gene
  GPW66_RS05850 qstR 244410..245054 (+) 645 WP_001188318.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPW66_RS05855 galU 245227..246099 (+) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPW66_RS05860 uvrA 246255..249077 (+) 2823 WP_000357693.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 20012.21 Da        Isoelectric Point: 5.2581

>NTDB_id=406817 GPW66_RS05845 WP_001887866.1 243582..244118(-) (ssb) [Vibrio cholerae strain 3528-08]
MASRGVNKVILIGNLGQDPEVRYMPSGDAMVNLTVATSETWRDKATGEQKEKTEWHRVSVFGKTAEFIGEYARKGTQVYV
DGQLQTRKWQDQQGQERYTTEVVVRWPAGEVQIMGSRPQQQGGMPAQGGMNAPAQQGSWGQPQQPAKQHQPMQQSAPQQY
SQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=406817 GPW66_RS05845 WP_001887866.1 243582..244118(-) (ssb) [Vibrio cholerae strain 3528-08]
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGATGCGATGGTGAATTTAACTGTTGCAACCTCCGAAACTTGGCGTGATAAAGCCACTGGTGAGCAAAAGGAAAAAACCG
AATGGCATAGAGTGTCTGTTTTCGGTAAAACCGCTGAATTCATTGGTGAATATGCGCGTAAGGGAACCCAAGTTTATGTT
GATGGGCAACTGCAAACGCGCAAGTGGCAAGACCAGCAAGGGCAAGAGCGTTATACGACGGAAGTGGTTGTGCGTTGGCC
TGCGGGTGAAGTGCAAATTATGGGCAGTCGTCCTCAACAGCAAGGTGGAATGCCAGCCCAAGGCGGCATGAATGCACCAG
CGCAGCAAGGAAGTTGGGGACAACCACAACAACCGGCGAAGCAGCATCAGCCTATGCAACAATCTGCGCCTCAACAGTAC
TCGCAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

83.146

100

0.831
  ssb Glaesserella parasuis strain SC1401

50.273

100

0.517
  ssb Neisseria meningitidis MC58

43.889

100

0.444
  ssb Neisseria gonorrhoeae MS11

43.889

100

0.444

Multiple sequence alignment