Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | GPA07_RS01220 | Genome accession | NZ_CP046653 |
| Coordinates | 217678..218220 (+) | Length | 180 a.a. |
| NCBI ID | WP_157291889.1 | Uniprot ID | - |
| Organism | Bacillus sp. ms-22 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 212678..223220
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPA07_RS01195 (GPA07_01195) | - | 213682..214092 (-) | 411 | WP_157291887.1 | hypothetical protein | - |
| GPA07_RS01200 (GPA07_01200) | - | 214108..215427 (-) | 1320 | WP_157291888.1 | hydrolase | - |
| GPA07_RS01205 (GPA07_01205) | - | 215722..215928 (+) | 207 | WP_008347561.1 | DUF951 domain-containing protein | - |
| GPA07_RS01210 (GPA07_01210) | ychF | 216145..217245 (+) | 1101 | WP_008359102.1 | redox-regulated ATPase YchF | - |
| GPA07_RS01215 (GPA07_01215) | rpsF | 217354..217641 (+) | 288 | WP_008359103.1 | 30S ribosomal protein S6 | - |
| GPA07_RS01220 (GPA07_01220) | ssbA | 217678..218220 (+) | 543 | WP_157291889.1 | single-stranded DNA-binding protein SsbA | Machinery gene |
| GPA07_RS01225 (GPA07_01225) | rpsR | 218261..218500 (+) | 240 | WP_008359105.1 | 30S ribosomal protein S18 | - |
| GPA07_RS01230 (GPA07_01230) | - | 218733..219719 (+) | 987 | WP_198303833.1 | ring-cleaving dioxygenase | - |
| GPA07_RS01235 (GPA07_01235) | - | 219716..220327 (+) | 612 | WP_157291891.1 | alpha/beta hydrolase | - |
| GPA07_RS01240 (GPA07_01240) | wrbA | 220387..221010 (+) | 624 | WP_051009120.1 | NAD(P)H:quinone oxidoreductase | - |
Sequence
Protein
Download Length: 180 a.a. Molecular weight: 19636.17 Da Isoelectric Point: 4.6109
>NTDB_id=406403 GPA07_RS01220 WP_157291889.1 217678..218220(+) (ssbA) [Bacillus sp. ms-22]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPNQSQYGNQNNQNRNQGNSFN
DDPFANDGKPIDISDDDLPF
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPNQSQYGNQNNQNRNQGNSFN
DDPFANDGKPIDISDDDLPF
Nucleotide
Download Length: 543 bp
>NTDB_id=406403 GPA07_RS01220 WP_157291889.1 217678..218220(+) (ssbA) [Bacillus sp. ms-22]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCGGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAATGTGGCTAACTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGCTTGCAGACAAGA
AACTATGAAAATCAGCAAGGACAGCGTGTCTTCGTGACAGAAGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAG
TGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGCAATAGCGGAGGCCAGTATTATGGCGGCAGCCAAAACGATCAGA
ATCCATTTGGAAATGAACCAAATCAAAGTCAATATGGCAATCAAAACAACCAAAATCGTAATCAGGGGAATAGCTTCAAT
GATGACCCATTTGCGAATGACGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCGGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAATGTGGCTAACTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGCTTGCAGACAAGA
AACTATGAAAATCAGCAAGGACAGCGTGTCTTCGTGACAGAAGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAG
TGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGCAATAGCGGAGGCCAGTATTATGGCGGCAGCCAAAACGATCAGA
ATCCATTTGGAAATGAACCAAATCAAAGTCAATATGGCAATCAAAACAACCAAAATCGTAATCAGGGGAATAGCTTCAAT
GATGACCCATTTGCGAATGACGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
85.556 |
100 |
0.856 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.889 |
100 |
0.589 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
64.151 |
58.889 |
0.378 |
| ssb | Glaesserella parasuis strain SC1401 |
36.559 |
100 |
0.378 |