Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GO596_RS04375 Genome accession   NZ_CP046628
Coordinates   876993..877499 (+) Length   168 a.a.
NCBI ID   WP_157339273.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU 77-23     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 871993..882499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO596_RS04355 (GO596_04355) - 873712..875109 (+) 1398 WP_157339271.1 SpaH/EbpB family LPXTG-anchored major pilin -
  GO596_RS04360 (GO596_04360) - 875206..876144 (+) 939 WP_157339272.1 class C sortase -
  GO596_RS04365 (GO596_04365) - 876318..876482 (+) 165 WP_021143095.1 hypothetical protein -
  GO596_RS04370 (GO596_04370) rpsF 876691..876981 (+) 291 WP_004233201.1 30S ribosomal protein S6 -
  GO596_RS04375 (GO596_04375) ssb 876993..877499 (+) 507 WP_157339273.1 single-stranded DNA-binding protein Machinery gene
  GO596_RS04380 (GO596_04380) rpsR 877559..877798 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  GO596_RS04385 (GO596_04385) - 877908..878564 (-) 657 WP_039697890.1 DUF1129 domain-containing protein -
  GO596_RS04390 (GO596_04390) - 878897..879841 (-) 945 WP_024343577.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18600.26 Da        Isoelectric Point: 4.9008

>NTDB_id=406244 GO596_RS04375 WP_157339273.1 876993..877499(+) (ssb) [Streptococcus equinus strain CNU 77-23]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINCVIWRQQAENLANWAKKGTLIGVTGRIQTR
NYENQQGQRVYVTEIVADSFQILESRATREGQSGGSYNGGFNNNSSFSGSSNGGFSSQPSQQTPNFGRDESPFGNSNPMD
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=406244 GO596_RS04375 WP_157339273.1 876993..877499(+) (ssb) [Streptococcus equinus strain CNU 77-23]
ATGATTAATAATGTAGTACTTGTTGGTCGTATGACCCGCGATGCAGAACTCCGTTACACACCATCTAATCAAGCAGTTGC
GACATTTACACTTGCTGTAAACCGTAACTTCAAGAACCAAAATGGTGAACGTGAAGCTGATTTTATTAACTGTGTGATTT
GGCGTCAGCAAGCTGAAAACTTAGCTAACTGGGCTAAAAAAGGTACATTGATTGGTGTTACTGGTCGTATTCAGACTCGT
AACTATGAAAATCAACAAGGTCAGCGCGTTTACGTAACTGAGATTGTTGCAGATAGCTTCCAAATCTTGGAAAGCCGTGC
TACACGTGAAGGACAATCTGGTGGTTCTTACAATGGTGGATTCAATAACAATTCATCATTTAGTGGATCTTCAAACGGTG
GTTTCTCATCACAACCTTCACAACAAACACCTAATTTCGGTCGTGACGAAAGCCCATTTGGGAACTCAAACCCAATGGAC
ATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.272

100

0.631
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.101

100

0.619
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.963

64.881

0.363

Multiple sequence alignment