Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | UMN179_RS05250 | Genome accession | NC_015460 |
| Coordinates | 1122922..1123437 (+) | Length | 171 a.a. |
| NCBI ID | WP_013745852.1 | Uniprot ID | F4HFM6 |
| Organism | Gallibacterium anatis UMN179 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1117922..1128437
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| UMN179_RS05235 (UMN179_01036) | - | 1118069..1118671 (+) | 603 | WP_013744975.1 | IS256 family transposase, variant Zn-binding type | - |
| UMN179_RS12685 (UMN179_01037) | - | 1118852..1119436 (-) | 585 | WP_013745850.1 | hypothetical protein | - |
| UMN179_RS05245 (UMN179_01038) | uvrA | 1119946..1122780 (-) | 2835 | WP_013745851.1 | excinuclease ABC subunit UvrA | - |
| UMN179_RS05250 (UMN179_01039) | ssb | 1122922..1123437 (+) | 516 | WP_013745852.1 | single-stranded DNA-binding protein | Machinery gene |
| UMN179_RS05255 (UMN179_01040) | - | 1123534..1124421 (-) | 888 | WP_013745853.1 | LysR family transcriptional regulator | - |
| UMN179_RS05260 (UMN179_01041) | - | 1124538..1125380 (+) | 843 | WP_013745854.1 | aldo/keto reductase | - |
| UMN179_RS05265 (UMN179_01043) | - | 1125712..1126809 (+) | 1098 | WP_013745856.1 | alpha/beta hydrolase | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19156.30 Da Isoelectric Point: 4.9833
>NTDB_id=40614 UMN179_RS05250 WP_013745852.1 1122922..1123437(+) (ssb) [Gallibacterium anatis UMN179]
MAGVNKVIIVGNLGNDPELRTFANGDAVANISVATSERWQDKQSGEWREITEWHRIVLFRRLAEIAGQYLRKGSKVYIEG
KLRTRKWQDQNGQDRYTTEIQADTLQMLDSRSDRMGVDMSAPIAQPQNQFAQPSYNQAAAQPNQFAQPAAAKAPQAAVNP
DTADFDDDMPF
MAGVNKVIIVGNLGNDPELRTFANGDAVANISVATSERWQDKQSGEWREITEWHRIVLFRRLAEIAGQYLRKGSKVYIEG
KLRTRKWQDQNGQDRYTTEIQADTLQMLDSRSDRMGVDMSAPIAQPQNQFAQPSYNQAAAQPNQFAQPAAAKAPQAAVNP
DTADFDDDMPF
Nucleotide
Download Length: 516 bp
>NTDB_id=40614 UMN179_RS05250 WP_013745852.1 1122922..1123437(+) (ssb) [Gallibacterium anatis UMN179]
ATGGCAGGCGTTAATAAAGTAATTATTGTGGGAAATTTGGGAAATGATCCTGAATTAAGAACTTTTGCAAATGGCGATGC
GGTCGCCAATATCAGTGTTGCCACCAGTGAACGCTGGCAAGACAAACAGAGCGGAGAATGGCGAGAAATTACTGAATGGC
ACCGTATCGTGTTATTCCGCCGTTTGGCAGAAATCGCCGGACAATATTTGCGTAAAGGATCAAAAGTTTATATAGAAGGC
AAATTACGCACGCGTAAATGGCAAGATCAAAACGGGCAAGATCGTTACACCACCGAAATTCAAGCGGACACATTACAAAT
GTTGGACAGTCGCAGCGATCGTATGGGCGTGGATATGTCTGCACCAATAGCTCAACCGCAAAATCAGTTTGCGCAACCGT
CTTATAATCAAGCGGCAGCTCAACCTAACCAATTCGCTCAACCGGCAGCCGCCAAAGCACCGCAAGCAGCGGTAAATCCG
GATACTGCGGATTTTGATGATGATATGCCGTTCTAA
ATGGCAGGCGTTAATAAAGTAATTATTGTGGGAAATTTGGGAAATGATCCTGAATTAAGAACTTTTGCAAATGGCGATGC
GGTCGCCAATATCAGTGTTGCCACCAGTGAACGCTGGCAAGACAAACAGAGCGGAGAATGGCGAGAAATTACTGAATGGC
ACCGTATCGTGTTATTCCGCCGTTTGGCAGAAATCGCCGGACAATATTTGCGTAAAGGATCAAAAGTTTATATAGAAGGC
AAATTACGCACGCGTAAATGGCAAGATCAAAACGGGCAAGATCGTTACACCACCGAAATTCAAGCGGACACATTACAAAT
GTTGGACAGTCGCAGCGATCGTATGGGCGTGGATATGTCTGCACCAATAGCTCAACCGCAAAATCAGTTTGCGCAACCGT
CTTATAATCAAGCGGCAGCTCAACCTAACCAATTCGCTCAACCGGCAGCCGCCAAAGCACCGCAAGCAGCGGTAAATCCG
GATACTGCGGATTTTGATGATGATATGCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
64.286 |
100 |
0.684 |
| ssb | Vibrio cholerae strain A1552 |
51.429 |
100 |
0.526 |
| ssb | Neisseria gonorrhoeae MS11 |
42.938 |
100 |
0.444 |
| ssb | Neisseria meningitidis MC58 |
42.938 |
100 |
0.444 |