Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GOQ09_RS02100 Genome accession   NZ_CP046622
Coordinates   446752..447309 (+) Length   185 a.a.
NCBI ID   WP_157611664.1    Uniprot ID   -
Organism   Variovorax paradoxus strain CSUSB     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 441752..452309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOQ09_RS02090 (GOQ09_02090) uvrA 442157..445243 (-) 3087 WP_157611662.1 excinuclease ABC subunit UvrA -
  GOQ09_RS02095 (GOQ09_02095) - 445262..446644 (-) 1383 WP_157611663.1 chloride channel protein -
  GOQ09_RS02100 (GOQ09_02100) ssb 446752..447309 (+) 558 WP_157611664.1 single-stranded DNA-binding protein Machinery gene
  GOQ09_RS02105 (GOQ09_02105) - 447385..447855 (-) 471 WP_157611665.1 hypothetical protein -
  GOQ09_RS02110 (GOQ09_02110) - 448022..449059 (-) 1038 WP_157611666.1 spore coat U domain-containing protein -
  GOQ09_RS02115 (GOQ09_02115) - 449056..451374 (-) 2319 WP_242630962.1 fimbria/pilus outer membrane usher protein -
  GOQ09_RS02120 (GOQ09_02120) - 451415..452140 (-) 726 WP_242630963.1 fimbria/pilus periplasmic chaperone -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 19398.29 Da        Isoelectric Point: 5.9554

>NTDB_id=406111 GOQ09_RS02100 WP_157611664.1 446752..447309(+) (ssb) [Variovorax paradoxus strain CSUSB]
MASVNKVIVVGNLGRDPEMRTFPSGDQVANVTVATTDRWKDKQSGEMREATEWHRIVFNGRLAEIAGQYLRKGSQVYVEG
SLRTRKWTDKDGIEKYTTEIRADQMQMLGSRQGQGGPSGGPEDDGGYSQGGGGGGYSQGGGGGGGGGGYAPRAPAAAPRA
PAAAPRQAPAKSSSGFDDMDDDIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=406111 GOQ09_RS02100 WP_157611664.1 446752..447309(+) (ssb) [Variovorax paradoxus strain CSUSB]
ATGGCATCGGTCAATAAAGTCATCGTCGTCGGCAACCTGGGGCGCGACCCCGAAATGCGTACCTTCCCAAGCGGCGACCA
GGTGGCAAACGTCACCGTGGCCACCACCGATCGCTGGAAAGACAAGCAAAGCGGCGAAATGCGCGAAGCCACCGAGTGGC
ACCGCATCGTTTTCAACGGCCGCCTGGCCGAAATTGCCGGCCAATACCTGCGCAAGGGCTCGCAGGTGTATGTCGAAGGC
AGCCTGCGCACGCGCAAGTGGACCGACAAGGACGGCATAGAAAAGTACACCACCGAAATCCGCGCCGACCAGATGCAGAT
GCTGGGTAGCCGCCAGGGCCAGGGCGGCCCCTCGGGCGGTCCGGAGGACGACGGCGGTTATTCGCAGGGTGGCGGCGGTG
GCGGCTACTCGCAAGGCGGTGGCGGTGGCGGCGGTGGCGGCGGTTATGCCCCCCGTGCACCCGCCGCGGCACCGCGCGCT
CCGGCGGCGGCGCCGCGCCAGGCACCGGCCAAGTCGTCGTCGGGCTTCGACGACATGGATGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53.093

100

0.557
  ssb Vibrio cholerae strain A1552

46.632

100

0.486
  ssb Neisseria gonorrhoeae MS11

44.809

98.919

0.443
  ssb Neisseria meningitidis MC58

44.262

98.919

0.438

Multiple sequence alignment