Detailed information NTG0406094

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: GPJ81_RS07945
• Genome accession: NZ_CP046621
• Coordinates: 1701362..1703584 (+)
• Length: 740 a.a.
• NCBI ID: WP_157191722.1
• Uniprot ID: A0A6I6GQH2
• Organism: Pseudomonas alkylphenolica strain Neo
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1696362..1708584

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPJ81_RS07925 (GPJ81_07925)	-	1698226..1698849 (+)	624	WP_157191718.1	glutathione S-transferase family protein	-
GPJ81_RS07930 (GPJ81_07930)	-	1698988..1699932 (+)	945	WP_157191719.1	ABC transporter ATP-binding protein	-
GPJ81_RS07935 (GPJ81_07935)	-	1699929..1700708 (+)	780	WP_157191720.1	ABC transporter permease	-
GPJ81_RS07940 (GPJ81_07940)	-	1700676..1701218 (-)	543	WP_157191721.1	DUF2062 domain-containing protein	-
GPJ81_RS07945 (GPJ81_07945)	comA	1701362..1703584 (+)	2223	WP_157191722.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
GPJ81_RS07950 (GPJ81_07950)	exbB	1703655..1704290 (+)	636	WP_038608555.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
GPJ81_RS07955 (GPJ81_07955)	-	1704287..1704718 (+)	432	WP_157191723.1	biopolymer transporter ExbD	-
GPJ81_RS07960 (GPJ81_07960)	lpxK	1704718..1705728 (+)	1011	WP_157191724.1	tetraacyldisaccharide 4'-kinase	-
GPJ81_RS07965 (GPJ81_07965)	-	1705767..1705952 (+)	186	WP_003247142.1	Trm112 family protein	-
GPJ81_RS07970 (GPJ81_07970)	kdsB	1705949..1706713 (+)	765	WP_157191725.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
GPJ81_RS07975 (GPJ81_07975)	-	1706713..1707177 (+)	465	WP_038608570.1	low molecular weight protein-tyrosine-phosphatase	-
GPJ81_RS07980 (GPJ81_07980)	murB	1707174..1708193 (+)	1020	WP_157191726.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 740 a.a.
• Molecular weight: 80225.94 Da
• Isoelectric Point: 10.4766

>NTDB_id=406094 GPJ81_RS07945 WP_157191722.1 1701362..1703584(+) (comA) [Pseudomonas alkylphenolica strain Neo]
MRTGMLALALGLLSLRVLPVLPSVGIIVLMALVGLGCLAWRVRPVGLFLLGLCWACLSAQQALEDRLAPELDGRTLWLEG
RVVGLPAHNGRSVRFELDAAQSRRAQLPQRMQLSWFDGPQVNSGERWRLAVTLKRPHGLLNPHGPDREAALLARRIGATG
NVKAGERLTPAEGAWRDGLRQRLSGVDAQGREAELVALVLGDGAGLARNSWETLQATGTVHLLVISGQHIGLLAGLVYGL
IAGLARLGLWPQALPWLPWACGAAFAAALGYGLLAGFQVPVQRACVMLAVVLLWRLRYRHLGVGLPLLLALNAVLLWEPL
ASLLPGFWLSFAAVAVLLFTFSGRLGAWSPWRAWGRAQWLIALGLLPVLIALGLPVSLSAPLANLFAVPWISLAVLPLAL
PGTLLLPVPFVGQGLLWLAGGLLDVLFSLLGQLAQWQPAWTPESLSWPLWALLWLGTVLLLLPRGLPMRVLGWPLLLLAA
FAPRERVPHGQVEVWQLDVGQGLAFVLRTRQHTMLYDAGPALGEHDLGERIVLPSLRKLGVQALDLMLLSHADADHAGGA
LAIKRGLPVHQVRGGETARLAPALQAQPCVSGERWQWDGVNFSVWQWQGGRDSNQESCVLLVEAGGERLLLAGDLDAAGE
RAWLGDWQATRLDWLQAPHHGSRTSSSQALLAATAPRGVLISRGRYNAFGHPHAEVMERYRINGIEAFDSAVHGALRLRL
GTFGEPLGLRGQRRFWRDPS

Nucleotide

• Length: 2223 bp

>NTDB_id=406094 GPJ81_RS07945 WP_157191722.1 1701362..1703584(+) (comA) [Pseudomonas alkylphenolica strain Neo]
ATGCGCACAGGGATGTTAGCGCTGGCACTGGGCCTGCTGAGCCTGCGTGTCTTACCGGTTTTGCCATCGGTCGGGATCAT
CGTTTTGATGGCCTTGGTTGGACTGGGCTGCCTGGCTTGGCGAGTTCGTCCGGTCGGTCTGTTCCTGCTCGGCCTGTGCT
GGGCCTGTCTGTCGGCACAGCAGGCGCTGGAGGATCGTCTGGCGCCGGAGCTCGATGGTCGTACGTTGTGGCTGGAGGGC
AGGGTGGTCGGTTTGCCCGCGCACAATGGCCGATCAGTTCGATTCGAACTCGATGCCGCTCAATCTCGCCGTGCGCAGTT
GCCGCAGCGCATGCAACTGAGCTGGTTTGACGGACCGCAGGTGAACAGTGGCGAGCGCTGGCGGCTGGCGGTCACCCTCA
AGCGTCCGCATGGCTTGCTCAATCCTCATGGCCCGGATCGCGAGGCTGCCTTGCTGGCCCGGCGTATCGGCGCCACCGGT
AACGTCAAGGCCGGGGAACGGCTGACGCCTGCCGAGGGTGCCTGGCGCGACGGGTTGCGCCAGCGCTTGTCGGGTGTGGA
TGCCCAGGGTCGTGAGGCAGAGCTGGTTGCCCTGGTACTGGGCGATGGCGCGGGCCTGGCCCGGAACAGCTGGGAAACGC
TGCAGGCGACCGGCACCGTGCACTTGCTGGTGATTTCCGGGCAGCATATCGGCCTGCTGGCCGGACTGGTCTATGGCCTG
ATTGCCGGTTTGGCGCGGCTTGGGCTTTGGCCGCAGGCCTTGCCTTGGCTGCCTTGGGCCTGCGGTGCAGCCTTTGCCGC
CGCGCTGGGTTATGGCTTGCTGGCCGGTTTTCAGGTGCCAGTTCAACGCGCCTGCGTGATGCTGGCGGTGGTGCTGCTCT
GGCGTTTGCGCTATCGCCACCTGGGGGTGGGCTTACCGTTGTTGCTGGCACTCAATGCCGTGTTGCTGTGGGAGCCATTG
GCCAGTCTGCTGCCAGGGTTCTGGCTATCATTCGCCGCGGTTGCGGTGCTGCTCTTCACGTTCAGTGGCCGGCTCGGCGC
CTGGAGCCCCTGGCGCGCGTGGGGTCGGGCGCAGTGGTTGATCGCCCTGGGATTGTTGCCAGTGTTGATCGCATTGGGGT
TGCCGGTCAGTCTCAGTGCGCCGTTGGCCAACCTGTTCGCCGTGCCCTGGATCAGCCTGGCGGTGCTGCCACTGGCATTG
CCGGGAACCCTGCTGCTGCCCGTGCCGTTTGTGGGGCAGGGGTTGCTCTGGCTGGCGGGTGGGCTGCTTGACGTGTTGTT
CAGTCTGCTTGGGCAACTGGCCCAATGGCAGCCGGCCTGGACACCGGAGTCTTTGTCATGGCCACTCTGGGCCTTGCTCT
GGTTGGGGACAGTGTTGCTGTTACTGCCCCGTGGCTTGCCAATGCGTGTGCTCGGCTGGCCATTGCTCCTGCTGGCTGCC
TTTGCGCCGCGAGAGCGGGTACCGCACGGCCAGGTGGAGGTCTGGCAGCTGGATGTCGGCCAGGGCCTGGCGTTCGTGCT
GCGCACCCGGCAGCACACGATGCTGTACGACGCCGGGCCTGCACTGGGTGAGCATGACCTGGGCGAGCGGATCGTGTTGC
CGAGCTTGCGCAAGTTGGGGGTGCAAGCGCTGGACCTGATGTTGCTCAGTCATGCCGATGCCGATCATGCGGGCGGCGCC
CTGGCGATCAAGCGCGGCTTGCCGGTGCATCAGGTGCGCGGAGGTGAAACCGCGCGGCTAGCCCCCGCCTTGCAGGCACA
GCCCTGTGTCAGCGGCGAGCGCTGGCAGTGGGACGGCGTGAACTTTTCGGTGTGGCAATGGCAGGGCGGTCGCGACAGCA
ACCAGGAATCCTGCGTACTGCTGGTCGAGGCCGGTGGCGAGCGGTTGTTGCTTGCCGGCGATCTCGATGCCGCTGGCGAG
CGGGCCTGGCTCGGTGACTGGCAAGCCACCCGGCTCGACTGGTTGCAGGCGCCGCACCATGGCAGTCGTACCTCGTCCAG
CCAGGCGTTGCTGGCAGCCACGGCGCCGCGTGGCGTATTGATTTCCAGGGGGCGTTACAACGCATTCGGCCATCCCCATG
CCGAGGTCATGGAACGCTACCGGATAAATGGCATCGAAGCCTTCGACAGTGCCGTGCACGGTGCGTTGCGCCTGCGTCTT
GGGACTTTCGGCGAGCCTCTGGGGCTGCGCGGCCAGCGGCGCTTCTGGCGAGACCCGAGTTGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-678)

• Competence protein (Competence) (198-461)

• Domain of unknown function (DUF4131) (DUF4131) (21-167)

3D structure

• AlphaFold DB: A0A6I6GQH2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	60.64	97.162	0.589
comA	Ralstonia pseudosolanacearum GMI1000	35.346	100	0.38