Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   GPJ81_RS07950 Genome accession   NZ_CP046621
Coordinates   1703655..1704290 (+) Length   211 a.a.
NCBI ID   WP_038608555.1    Uniprot ID   -
Organism   Pseudomonas alkylphenolica strain Neo     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1698655..1709290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPJ81_RS07930 (GPJ81_07930) - 1698988..1699932 (+) 945 WP_157191719.1 ABC transporter ATP-binding protein -
  GPJ81_RS07935 (GPJ81_07935) - 1699929..1700708 (+) 780 WP_157191720.1 ABC transporter permease -
  GPJ81_RS07940 (GPJ81_07940) - 1700676..1701218 (-) 543 WP_157191721.1 DUF2062 domain-containing protein -
  GPJ81_RS07945 (GPJ81_07945) comA 1701362..1703584 (+) 2223 WP_157191722.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GPJ81_RS07950 (GPJ81_07950) exbB 1703655..1704290 (+) 636 WP_038608555.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  GPJ81_RS07955 (GPJ81_07955) - 1704287..1704718 (+) 432 WP_157191723.1 biopolymer transporter ExbD -
  GPJ81_RS07960 (GPJ81_07960) lpxK 1704718..1705728 (+) 1011 WP_157191724.1 tetraacyldisaccharide 4'-kinase -
  GPJ81_RS07965 (GPJ81_07965) - 1705767..1705952 (+) 186 WP_003247142.1 Trm112 family protein -
  GPJ81_RS07970 (GPJ81_07970) kdsB 1705949..1706713 (+) 765 WP_157191725.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GPJ81_RS07975 (GPJ81_07975) - 1706713..1707177 (+) 465 WP_038608570.1 low molecular weight protein-tyrosine-phosphatase -
  GPJ81_RS07980 (GPJ81_07980) murB 1707174..1708193 (+) 1020 WP_157191726.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22842.04 Da        Isoelectric Point: 6.8759

>NTDB_id=406095 GPJ81_RS07950 WP_038608555.1 1703655..1704290(+) (exbB) [Pseudomonas alkylphenolica strain Neo]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPPHLLGQVWLWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGTGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=406095 GPJ81_RS07950 WP_038608555.1 1703655..1704290(+) (exbB) [Pseudomonas alkylphenolica strain Neo]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCCGCCATGGCTATCGTCGC
CGAGCGTCTCTGGACCCTGCGCGCCAGCCGGGTCACTCCGCCGCACCTGCTGGGTCAGGTATGGCTGTGGATCAAAGACA
AGCAGCTGACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCGTTGGGCGAGATCCTCGCCGCGGGCCTGGCTAAC
TCCCGGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAAGCCGCAGCCCGGGTAATCCACGAGCTGGAGCGCTATAT
CAATGCCTTGGGCACCATTGCCGCGATGGCACCGTTGCTTGGTCTGCTCGGCACCGTACTGGGCATGATCGATATCTTCA
GTGCATTCATGGGCACCGGCATGACCACCAATGCCGCGGTGTTGGCCGGCGGTATCTCGAAAGCATTGATCACCACTGCA
GCCGGTCTGATGGTCGGTATTCCGTCGGTGTTCTTCCACCGCTTCCTGCAGCGCCGTATCGACGAACTGGTGGTCGGCAT
GGAGCAAGAGGCGATCAAGCTGGTCGAAGTGGTGCAGGGCGACCGTGATGTCGACCTGGCCGAGGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853

Multiple sequence alignment