Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   GOY17_RS15880 Genome accession   NZ_CP046603
Coordinates   3488706..3489764 (-) Length   352 a.a.
NCBI ID   WP_115844053.1    Uniprot ID   A0A3D8V9N5
Organism   Lysobacter soli strain XL170     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3483706..3494764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOY17_RS15860 (GOY17_15860) - 3484717..3486651 (-) 1935 WP_157031104.1 type IV pilus secretin PilQ family protein -
  GOY17_RS15865 (GOY17_15865) - 3486670..3487221 (-) 552 WP_157031105.1 pilus assembly protein PilP -
  GOY17_RS15870 (GOY17_15870) pilO 3487223..3487924 (-) 702 WP_157031106.1 type 4a pilus biogenesis protein PilO -
  GOY17_RS15875 (GOY17_15875) - 3487921..3488706 (-) 786 WP_157031107.1 PilN domain-containing protein -
  GOY17_RS15880 (GOY17_15880) pilM 3488706..3489764 (-) 1059 WP_115844053.1 pilus assembly protein PilM Machinery gene
  GOY17_RS15885 (GOY17_15885) - 3490046..3492538 (+) 2493 WP_157031108.1 penicillin-binding protein 1A -
  GOY17_RS15890 (GOY17_15890) - 3492761..3493414 (+) 654 WP_157031109.1 hypothetical protein -
  GOY17_RS15895 (GOY17_15895) - 3493436..3494047 (-) 612 WP_157031110.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37536.92 Da        Isoelectric Point: 4.4951

>NTDB_id=406000 GOY17_RS15880 WP_115844053.1 3488706..3489764(-) (pilM) [Lysobacter soli strain XL170]
MGIVTKSQPAVVGVDISSTAVKLLQLSKAGNRYRVEHYAVEPLPPNAVVEKSIVEVEAVGEAIRRAVARSGTRAKHAAAA
VAGSSVITKVIPMPGDLDEDDLESQVELEAVNYVPYPIEEVNHDFEVLGPMPGSPDMLQVLLAASRSENVEVRASALEIG
GLTPKVMDVEAFALENAFALVADQLGGPRDGLIALVDSGATMTTLNVLRNGRSLYAREQVFGGKQLTDEVMRRYGLSYEE
AGLAKRQGGLPESYEAEVLEPFKEAMVQQISRLLQFFYAGSEFNRVDQIVLAGGCASIAGIAEMVEEQLGVPTTIANPLA
HMTLGPRVQAHALAQDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=406000 GOY17_RS15880 WP_115844053.1 3488706..3489764(-) (pilM) [Lysobacter soli strain XL170]
GTGGGGATCGTCACAAAAAGCCAGCCGGCGGTCGTCGGCGTGGATATCAGTTCGACTGCCGTAAAGCTGTTGCAGCTCTC
CAAGGCCGGCAACCGCTATCGCGTCGAGCATTACGCGGTCGAGCCGCTGCCGCCCAACGCCGTCGTCGAGAAGAGCATCG
TCGAGGTCGAGGCCGTCGGCGAGGCGATCCGTCGCGCCGTCGCGCGTTCGGGCACTCGCGCCAAGCACGCTGCCGCCGCG
GTCGCGGGTTCGTCGGTCATCACCAAGGTCATCCCGATGCCGGGCGACCTGGATGAGGACGACCTCGAGTCGCAGGTCGA
GCTGGAGGCGGTGAACTACGTCCCGTATCCGATCGAAGAGGTCAACCACGATTTCGAAGTGCTGGGCCCGATGCCCGGCA
GCCCGGACATGCTGCAGGTGCTGCTTGCGGCGTCGCGTTCGGAGAACGTCGAAGTGCGCGCCTCGGCGCTGGAGATCGGC
GGCCTCACCCCGAAGGTGATGGACGTGGAGGCCTTCGCGCTCGAGAACGCCTTCGCGCTGGTCGCCGACCAGCTCGGCGG
TCCGCGCGACGGCCTCATCGCGCTGGTCGATTCCGGCGCGACGATGACCACGCTCAACGTCCTGCGCAACGGTCGCAGCC
TGTATGCGCGCGAGCAGGTCTTCGGTGGCAAGCAGCTCACCGACGAAGTGATGCGCCGCTACGGCCTGAGCTACGAGGAA
GCCGGCCTGGCCAAGCGCCAGGGTGGCCTGCCGGAGAGCTACGAAGCCGAAGTGCTGGAGCCCTTCAAGGAGGCGATGGT
CCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTACGCGGGCAGCGAATTCAACCGCGTCGACCAGATCGTCCTGGCCGGCG
GTTGCGCGTCCATCGCCGGCATCGCCGAGATGGTCGAGGAACAGCTCGGCGTGCCGACCACCATCGCCAACCCGCTGGCG
CACATGACGCTCGGCCCGCGCGTGCAGGCGCATGCGCTGGCGCAGGACGCCCCGGCCCTGATGATCGCCTGCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3D8V9N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

50.716

99.148

0.503
  comM Acinetobacter nosocomialis M2

50.43

99.148

0.5
  comM Acinetobacter baylyi ADP1

49.28

98.58

0.486
  pilM Legionella pneumophila strain ERS1305867

45.058

97.727

0.44

Multiple sequence alignment