Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GOY17_RS14315 Genome accession   NZ_CP046603
Coordinates   3136430..3136939 (-) Length   169 a.a.
NCBI ID   WP_157030901.1    Uniprot ID   -
Organism   Lysobacter soli strain XL170     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3131430..3141939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOY17_RS14295 (GOY17_14295) rfbD 3132991..3133875 (-) 885 WP_157030898.1 dTDP-4-dehydrorhamnose reductase -
  GOY17_RS14300 (GOY17_14300) rfbC 3133886..3134443 (-) 558 WP_157030899.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  GOY17_RS14305 (GOY17_14305) rfbA 3134440..3135324 (-) 885 WP_157030900.1 glucose-1-phosphate thymidylyltransferase RfbA -
  GOY17_RS14310 (GOY17_14310) rfbB 3135334..3136386 (-) 1053 WP_115842490.1 dTDP-glucose 4,6-dehydratase -
  GOY17_RS14315 (GOY17_14315) ssb 3136430..3136939 (-) 510 WP_157030901.1 single-stranded DNA-binding protein Machinery gene
  GOY17_RS14320 (GOY17_14320) - 3137080..3137394 (-) 315 WP_157030902.1 DUF5076 domain-containing protein -
  GOY17_RS14325 (GOY17_14325) - 3137394..3137678 (-) 285 WP_157030903.1 hypothetical protein -
  GOY17_RS14330 (GOY17_14330) - 3137821..3138837 (+) 1017 WP_157030904.1 polyprenyl synthetase family protein -
  GOY17_RS14335 (GOY17_14335) - 3138827..3139357 (+) 531 WP_198173698.1 YcxB family protein -
  GOY17_RS14340 (GOY17_14340) murD 3139385..3140809 (-) 1425 WP_232338435.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18289.05 Da        Isoelectric Point: 5.9967

>NTDB_id=405997 GOY17_RS14315 WP_157030901.1 3136430..3136939(-) (ssb) [Lysobacter soli strain XL170]
MARGINKVILVGNLGDDPETKYTQGGMAVTKARLATTSVRKDRDGNTQERTEWHRVTFFGKLGEIAGEYLRKGSQVYVEG
SIRYDKYTGQDGVERYSTDIIADEMQMLGGRAGGEGGGGSRSEYRGGGAGGGERSSRPPARQESAPRREAPPAKSSSFND
DFADDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=405997 GOY17_RS14315 WP_157030901.1 3136430..3136939(-) (ssb) [Lysobacter soli strain XL170]
ATGGCACGCGGCATCAACAAGGTGATCCTGGTCGGCAACCTGGGCGACGATCCCGAAACCAAGTACACCCAGGGCGGCAT
GGCCGTCACCAAGGCCCGCCTGGCGACGACCAGCGTGCGCAAGGACCGCGACGGCAACACCCAGGAGCGCACCGAATGGC
ACCGGGTGACCTTCTTCGGAAAGCTCGGCGAGATCGCCGGCGAATACCTGCGCAAGGGTAGCCAGGTCTACGTCGAAGGC
TCGATCCGCTACGACAAGTACACCGGCCAAGACGGCGTCGAGCGCTATTCCACCGACATCATCGCCGACGAGATGCAGAT
GCTCGGCGGTCGTGCGGGCGGCGAAGGTGGCGGCGGTAGCCGCAGTGAATACCGCGGCGGTGGCGCTGGCGGTGGCGAGC
GTTCGTCGCGTCCGCCGGCGCGCCAGGAATCGGCCCCGCGTCGCGAGGCGCCGCCGGCCAAGTCGAGCAGCTTCAACGAC
GACTTCGCGGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

46.111

100

0.491
  ssb Neisseria meningitidis MC58

46.286

100

0.479
  ssb Neisseria gonorrhoeae MS11

45.714

100

0.473
  ssb Glaesserella parasuis strain SC1401

40.86

100

0.45

Multiple sequence alignment