Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   GO005_RS12485 Genome accession   NZ_CP046592
Coordinates   2440982..2441278 (-) Length   98 a.a.
NCBI ID   WP_029726719.1    Uniprot ID   -
Organism   Bacillus subtilis strain TR21     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2435982..2446278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO005_RS12440 (GO005_12420) tasA 2436389..2437174 (-) 786 WP_014664586.1 biofilm matrix protein TasA -
  GO005_RS12445 (GO005_12425) sipW 2437238..2437810 (-) 573 WP_072692741.1 signal peptidase I SipW -
  GO005_RS12450 (GO005_12430) tapA 2437794..2438555 (-) 762 WP_029726724.1 amyloid fiber anchoring/assembly protein TapA -
  GO005_RS12455 (GO005_12435) yqzG 2438827..2439153 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  GO005_RS12460 (GO005_12440) spoIITA 2439195..2439374 (-) 180 WP_029726723.1 YqzE family protein -
  GO005_RS12465 (GO005_12445) comGG 2439446..2439820 (-) 375 WP_029726722.1 ComG operon protein ComGG Machinery gene
  GO005_RS12470 (GO005_12450) comGF 2439821..2440204 (-) 384 WP_032722118.1 ComG operon protein ComGF Machinery gene
  GO005_RS12475 (GO005_12455) comGE 2440230..2440577 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  GO005_RS12480 (GO005_12460) comGD 2440561..2440992 (-) 432 WP_029726720.1 comG operon protein ComGD Machinery gene
  GO005_RS12485 (GO005_12465) comGC 2440982..2441278 (-) 297 WP_029726719.1 comG operon protein ComGC Machinery gene
  GO005_RS12490 (GO005_12470) comGB 2441292..2442329 (-) 1038 WP_029317912.1 comG operon protein ComGB Machinery gene
  GO005_RS12495 (GO005_12475) comGA 2442316..2443386 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  GO005_RS12500 (GO005_12480) - 2443599..2443796 (-) 198 WP_014480259.1 CBS domain-containing protein -
  GO005_RS12505 (GO005_12485) corA 2443798..2444751 (-) 954 WP_004399136.1 magnesium transporter CorA -
  GO005_RS12510 (GO005_12490) yqhB 2444894..2446222 (+) 1329 WP_003230150.1 hemolysin family protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10835.67 Da        Isoelectric Point: 6.2112

>NTDB_id=405882 GO005_RS12485 WP_029726719.1 2440982..2441278(-) (comGC) [Bacillus subtilis strain TR21]
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQMTAFELDHEGQTPSLADLQSEGYVKNDAV
CPNGKRIIITGGEVKVEH

Nucleotide


Download         Length: 297 bp        

>NTDB_id=405882 GO005_RS12485 WP_029726719.1 2440982..2441278(-) (comGC) [Bacillus subtilis strain TR21]
ATGAATGAGAAAGGATTTACACTTGTTGAAATGTTAATCGTGCTCTTTATTATTTCGATTTTGCTTTTAATTACGATACC
GAACGTCACGAAACATAACCAAACCATTCAAAAAAAGGGCTGTGAAGGCTTACAAAACATGGTTAAGGCACAAATGACTG
CATTTGAGCTTGATCATGAAGGACAAACTCCGAGCCTTGCCGATTTACAGTCAGAGGGCTATGTGAAAAACGATGCTGTC
TGTCCAAATGGTAAGCGCATTATCATCACCGGCGGAGAAGTTAAGGTTGAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

98.98

100

0.99
  comGC Staphylococcus aureus MW2

41.304

93.878

0.388
  comGC Staphylococcus aureus N315

41.304

93.878

0.388
  comYC Streptococcus suis isolate S10

49.333

76.531

0.378

Multiple sequence alignment