Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GO004_RS14135 Genome accession   NZ_CP046591
Coordinates   2701513..2702031 (+) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain R31     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2696513..2707031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO004_RS14115 (GO004_14105) yyzM 2697587..2697793 (+) 207 WP_003226838.1 DUF951 family protein -
  GO004_RS14120 (GO004_14110) yyaE 2697844..2699847 (+) 2004 WP_032722829.1 molybdopterin-dependent oxidoreductase -
  GO004_RS14125 (GO004_14115) ychF 2699974..2701074 (+) 1101 WP_032722828.1 redox-regulated ATPase YchF -
  GO004_RS14130 (GO004_14120) rpsF 2701185..2701472 (+) 288 WP_003244064.1 30S ribosomal protein S6 -
  GO004_RS14135 (GO004_14125) ssbA 2701513..2702031 (+) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  GO004_RS14140 (GO004_14130) rpsR 2702075..2702314 (+) 240 WP_003219224.1 30S ribosomal protein S18 -
  GO004_RS14145 (GO004_14135) xth 2702379..2703137 (+) 759 WP_032722827.1 exodeoxyribonuclease III -
  GO004_RS14150 (GO004_14140) ccpB 2703196..2704131 (+) 936 WP_032722826.1 transcriptional regulator CcpB -
  GO004_RS14155 (GO004_14145) yyaH 2704187..2704567 (+) 381 WP_003244460.1 VOC family protein -
  GO004_RS14160 (GO004_14150) maa 2704585..2705139 (+) 555 WP_032722825.1 sugar O-acetyltransferase -
  GO004_RS14165 (GO004_14155) yyaJ 2705173..2706528 (-) 1356 WP_029318525.1 MFS transporter -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=405811 GO004_RS14135 WP_003219228.1 2701513..2702031(+) (ssbA) [Bacillus subtilis strain R31]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=405811 GO004_RS14135 WP_003219228.1 2701513..2702031(+) (ssbA) [Bacillus subtilis strain R31]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAACCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment