Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GNH96_RS13905 Genome accession   NZ_CP046565
Coordinates   2987891..2988409 (-) Length   172 a.a.
NCBI ID   WP_169604204.1    Uniprot ID   A0A858QAR8
Organism   Methylococcus geothermalis strain IM1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2982891..2993409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNH96_RS13890 (GNH96_13845) - 2983501..2983911 (+) 411 WP_169604202.1 GFA family protein -
  GNH96_RS13895 (GNH96_13850) zwf 2984397..2985878 (-) 1482 WP_169604203.1 glucose-6-phosphate dehydrogenase -
  GNH96_RS13900 (GNH96_13855) - 2987026..2987742 (+) 717 WP_228719878.1 DUF2490 domain-containing protein -
  GNH96_RS13905 (GNH96_13860) ssb 2987891..2988409 (-) 519 WP_169604204.1 single-stranded DNA-binding protein Machinery gene
  GNH96_RS13910 (GNH96_13865) - 2988442..2989806 (-) 1365 WP_169604736.1 MFS transporter -
  GNH96_RS13915 (GNH96_13870) uvrA 2990110..2992938 (+) 2829 WP_169604205.1 excinuclease ABC subunit UvrA -
  GNH96_RS13920 (GNH96_13875) - 2993122..2993379 (+) 258 WP_169604206.1 site-specific integrase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18177.05 Da        Isoelectric Point: 5.0100

>NTDB_id=405592 GNH96_RS13905 WP_169604204.1 2987891..2988409(-) (ssb) [Methylococcus geothermalis strain IM1]
MASRGVNKVILIGNLGADPEVRYMPNGGAVANLRIATSESWKDQQTGQTQERTEWHSVVMYRRLAEIAGEYLKKGSKVYI
EGSLRTRKWQDKNTGQDRYTTEIIGNEMQMLDRAGGGMGGGGGMGAGEPDWDAPPAGGAKPRSPGGGYGGGTGGSGAGSS
QFDEGFDDDVPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=405592 GNH96_RS13905 WP_169604204.1 2987891..2988409(-) (ssb) [Methylococcus geothermalis strain IM1]
ATGGCCAGTCGAGGCGTCAACAAAGTCATACTCATCGGCAATCTGGGCGCAGACCCGGAAGTGCGTTACATGCCGAACGG
CGGCGCGGTCGCCAATCTGCGCATCGCCACCAGCGAATCCTGGAAGGATCAGCAGACCGGTCAGACCCAGGAGCGCACCG
AATGGCACAGCGTGGTGATGTACCGCCGCCTGGCCGAAATCGCCGGCGAGTACCTGAAGAAAGGCAGCAAGGTCTACATT
GAAGGGAGCCTTCGGACCCGAAAATGGCAGGACAAGAACACCGGCCAGGATCGCTACACCACCGAAATCATCGGCAATGA
AATGCAGATGCTCGACCGCGCCGGCGGGGGCATGGGGGGCGGCGGAGGAATGGGCGCGGGTGAACCGGACTGGGACGCCC
CGCCGGCCGGCGGGGCCAAGCCACGCAGCCCGGGTGGCGGATACGGCGGCGGCACCGGCGGAAGCGGCGCCGGAAGCAGC
CAATTCGACGAGGGATTCGACGACGACGTGCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A858QAR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.054

100

0.581
  ssb Glaesserella parasuis strain SC1401

50.549

100

0.535
  ssb Neisseria gonorrhoeae MS11

46.328

100

0.477
  ssb Neisseria meningitidis MC58

45.143

100

0.459

Multiple sequence alignment