Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HXS80_RS08455 Genome accession   NZ_CP058556
Coordinates   2016096..2017709 (-) Length   537 a.a.
NCBI ID   WP_179181281.1    Uniprot ID   -
Organism   Streptomyces sp. CB04723     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2011096..2022709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXS80_RS08435 (HXS80_08435) - 2011994..2012854 (+) 861 WP_179181280.1 M23 family metallopeptidase -
  HXS80_RS08440 (HXS80_08440) - 2012805..2013362 (-) 558 WP_179184290.1 TetR/AcrR family transcriptional regulator -
  HXS80_RS08445 (HXS80_08445) whiG 2013832..2014668 (-) 837 WP_098011062.1 RNA polymerase sigma factor WhiG -
  HXS80_RS08450 (HXS80_08450) dprA 2014924..2016036 (-) 1113 WP_179184291.1 DNA-processing protein DprA -
  HXS80_RS08455 (HXS80_08455) comM 2016096..2017709 (-) 1614 WP_179181281.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HXS80_RS08460 (HXS80_08460) - 2017709..2018068 (-) 360 WP_030117749.1 YraN family protein -
  HXS80_RS08465 (HXS80_08465) - 2018237..2018545 (-) 309 WP_003965949.1 DUF2469 domain-containing protein -
  HXS80_RS08470 (HXS80_08470) - 2018610..2019104 (-) 495 WP_179181282.1 NUDIX hydrolase -
  HXS80_RS08475 (HXS80_08475) lepB 2019101..2019859 (-) 759 WP_030121329.1 signal peptidase I -
  HXS80_RS08480 (HXS80_08480) lepB 2019910..2020800 (-) 891 WP_030331049.1 signal peptidase I -
  HXS80_RS08485 (HXS80_08485) lepB 2020703..2021761 (-) 1059 WP_179181283.1 signal peptidase I -
  HXS80_RS08490 (HXS80_08490) lepB 2021754..2022524 (-) 771 WP_179181284.1 signal peptidase I -

Sequence

Protein


Download         Length: 537 a.a.        Molecular weight: 54914.10 Da        Isoelectric Point: 7.4529

>NTDB_id=405499 HXS80_RS08455 WP_179181281.1 2016096..2017709(-) (comM) [Streptomyces sp. CB04723]
MGFARACSVALVGVEGVVVEVQADLEPGVAAFTLVGLPDKSLVESRDRVRAAVVNSGAEWPQKKLTVGLSPASVPKSGSG
FDLAVACAALGAAGRLDPAAIADVVMVGELGLDGRVRPVRGVLPAILAAAEAGYEHVVVAEQSAGEAALVPGVSVLGVRS
LRQLIAVLCDEPVPDEPVQGQGRLDAASAGLMVPGAGVGVGLAAGGDAHRPDLADVAGQPRARQALEVAAAGGHHLLFTG
PPGAGKTMLAERLSAVLPPLTRRESLEVTAVHSVAGILHPGEPLVSRAPYCAPHHSATMQSLIGGGNGVPRPGAVSLAHR
GVLFLDEAPEFSGKALDALRQPLESGHVVVARAAGVVRLPARFLMVLAANPCPCGRHTLTGAGCECPPSVVRRYQARLSG
PLLDRVDLRVEVEPVGRADLLGQGGRGEPTAVVAARVRDARARAAERLAATPWTTNSEVPGHELRTRLPAAPGALAAAER
DLERGALTARGLDRVLRVAWTVADLRGADRPDACDVAVALELRTGVQRGVPLGAGQR

Nucleotide


Download         Length: 1614 bp        

>NTDB_id=405499 HXS80_RS08455 WP_179181281.1 2016096..2017709(-) (comM) [Streptomyces sp. CB04723]
ATGGGCTTCGCACGCGCGTGTTCCGTGGCGCTGGTCGGCGTCGAGGGGGTGGTGGTGGAGGTCCAGGCGGACCTGGAGCC
GGGGGTGGCGGCGTTCACCCTGGTCGGGCTGCCGGACAAGAGCCTGGTCGAGAGCCGGGACCGGGTACGGGCCGCCGTGG
TGAACTCCGGGGCCGAGTGGCCGCAGAAGAAGCTCACGGTCGGGCTCTCCCCGGCCTCGGTGCCGAAGAGCGGTTCGGGG
TTCGACCTCGCCGTGGCCTGTGCGGCGCTCGGGGCGGCGGGACGCCTCGACCCCGCCGCGATCGCCGACGTGGTGATGGT
CGGGGAGCTGGGCCTGGACGGCCGCGTCCGTCCGGTACGGGGCGTGCTGCCCGCGATCCTGGCCGCCGCCGAGGCGGGGT
ACGAACACGTCGTCGTCGCCGAGCAGTCCGCCGGCGAAGCGGCGCTGGTGCCGGGCGTCTCAGTGCTCGGGGTCCGCAGT
CTGCGCCAGCTCATCGCCGTCCTGTGCGACGAACCCGTGCCCGACGAGCCCGTGCAGGGCCAGGGGCGCCTCGACGCGGC
GTCGGCTGGGCTGATGGTCCCCGGCGCCGGGGTCGGCGTGGGGCTCGCCGCGGGCGGGGACGCGCACCGGCCGGACCTGG
CGGACGTCGCGGGCCAGCCACGGGCGCGCCAGGCGCTGGAGGTGGCGGCGGCAGGCGGGCACCATCTGCTGTTCACGGGT
CCGCCTGGCGCGGGGAAGACCATGCTGGCCGAGCGGCTGTCGGCGGTCCTGCCGCCGCTGACCCGGCGGGAATCCCTCGA
AGTGACGGCGGTTCATTCGGTGGCGGGCATCCTCCACCCGGGTGAACCGCTGGTCTCCCGCGCGCCGTACTGCGCCCCGC
ACCACTCGGCGACCATGCAGTCCCTGATCGGCGGCGGCAACGGGGTGCCGAGGCCCGGAGCGGTGTCCCTCGCTCATAGG
GGGGTGCTTTTTCTGGACGAGGCCCCGGAGTTCTCGGGGAAGGCGCTGGACGCGCTGCGCCAGCCGCTGGAGTCCGGGCA
CGTGGTGGTCGCGCGGGCGGCGGGCGTGGTGCGGCTGCCGGCCCGGTTCCTCATGGTCCTCGCCGCCAACCCGTGTCCCT
GCGGACGGCACACCCTCACCGGGGCGGGCTGCGAGTGCCCGCCCTCGGTGGTCCGCCGCTATCAGGCACGGCTGTCCGGT
CCGCTGCTCGACCGGGTGGACCTGCGGGTCGAGGTGGAGCCGGTCGGACGCGCCGATCTCCTGGGGCAGGGCGGCCGGGG
CGAGCCGACGGCCGTCGTCGCCGCACGGGTGCGGGACGCCAGGGCACGGGCGGCGGAGCGGCTGGCCGCCACCCCGTGGA
CCACCAACAGCGAGGTGCCCGGCCATGAGCTGCGCACCCGGCTGCCGGCGGCCCCGGGTGCGCTGGCAGCGGCGGAGCGG
GATCTGGAGCGAGGGGCTCTGACTGCCCGGGGGCTGGACCGGGTGCTGCGCGTCGCGTGGACCGTGGCGGACCTGCGGGG
CGCGGACCGCCCGGACGCCTGCGACGTGGCGGTCGCCCTGGAGCTGCGGACCGGCGTGCAGCGCGGGGTGCCGCTGGGGG
CGGGGCAGCGGTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(212-417)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(427-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

41.109

97.393

0.4
  comM Haemophilus influenzae Rd KW20

39.848

98.138

0.391
  comM Vibrio cholerae O1 biovar El Tor strain E7946

40.945

94.6

0.387
  comM Vibrio cholerae strain A1552

40.945

94.6

0.387
  comM Acinetobacter baylyi ADP1

39.171

98.883

0.387
  comM Glaesserella parasuis strain SC1401

37.618

98.51

0.371