Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EML4_RS05565 Genome accession   NZ_CP058525
Coordinates   1122672..1123256 (-) Length   194 a.a.
NCBI ID   WP_162993012.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain EML4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1117672..1128256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EML4_RS05550 (EML4_05550) - 1120416..1121045 (+) 630 WP_003502754.1 MarC family protein -
  EML4_RS05555 (EML4_05555) - 1121172..1122320 (+) 1149 WP_003502756.1 HPP family protein -
  EML4_RS05560 (EML4_05560) - 1122375..1122638 (-) 264 WP_223564850.1 hypothetical protein -
  EML4_RS05565 (EML4_05565) ssb 1122672..1123256 (-) 585 WP_162993012.1 single-stranded DNA-binding protein Machinery gene
  EML4_RS05570 (EML4_05570) uvrA 1123521..1126442 (+) 2922 WP_003502764.1 excinuclease ABC subunit UvrA Machinery gene
  EML4_RS05575 (EML4_05575) - 1126499..1127299 (+) 801 WP_060724997.1 DUF72 domain-containing protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 20652.62 Da        Isoelectric Point: 4.7391

>NTDB_id=405465 EML4_RS05565 WP_162993012.1 1122672..1123256(-) (ssb) [Agrobacterium tumefaciens strain EML4]
MLLPVMMAGGQDDEMAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERKEKTEWHTVVVFNEGLCK
VVEQYVKKGAKLYIEGQLQTRKWQDQTGNDRYSTEIVLQGFNSTLTMLDGRGEGGGAARSGGGDFGGGNDYGSGGGSSYG
GGYDQQSSSRGGSARGGSQPAGGFSNDMDDDIPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=405465 EML4_RS05565 WP_162993012.1 1122672..1123256(-) (ssb) [Agrobacterium tumefaciens strain EML4]
ATGCTATTGCCGGTCATGATGGCCGGCGGACAGGATGACGAGATGGCTGGTAGCGTAAACAAGGTAATTCTGATCGGGAA
CGTGGGCGCTGATCCCGAAATCCGCCGGACGCAGGATGGCCGCCCCATCGCCAACCTGCGCATCGCCACCTCGGAGACCT
GGCGTGACCGCAATAGCGGCGAGCGCAAGGAAAAGACCGAATGGCACACCGTCGTGGTTTTCAACGAAGGCCTGTGCAAG
GTCGTCGAGCAATATGTCAAGAAGGGCGCCAAGCTCTATATCGAAGGCCAGCTGCAGACCCGCAAATGGCAGGACCAGAC
CGGTAACGACCGTTACTCCACCGAAATCGTGCTGCAGGGCTTCAACTCCACGCTGACCATGCTTGACGGTCGCGGCGAGG
GCGGCGGTGCTGCCCGCAGCGGCGGTGGCGATTTCGGCGGCGGCAACGATTATGGCAGCGGCGGCGGCTCCAGCTATGGC
GGCGGTTACGACCAGCAGTCCTCGTCGCGCGGCGGCTCTGCCCGTGGCGGCAGCCAGCCCGCCGGCGGCTTCTCCAATGA
TATGGACGACGACATCCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(19-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.178

100

0.459
  ssb Vibrio cholerae strain A1552

49.153

91.237

0.448
  ssb Neisseria gonorrhoeae MS11

39.665

92.268

0.366
  ssb Neisseria meningitidis MC58

39.665

92.268

0.366

Multiple sequence alignment