Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   GOD87_RS16110 Genome accession   NZ_CP046536
Coordinates   3436916..3437656 (-) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain XL380     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3431916..3442656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOD87_RS16090 (GOD87_16090) aroB 3432453..3433535 (-) 1083 WP_057094658.1 3-dehydroquinate synthase -
  GOD87_RS16095 (GOD87_16095) aroK 3433564..3434133 (-) 570 WP_000643712.1 shikimate kinase AroK -
  GOD87_RS16100 (GOD87_16100) pilQ 3434145..3436310 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  GOD87_RS16105 (GOD87_16105) pilP 3436378..3436905 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  GOD87_RS16110 (GOD87_16110) pilO 3436916..3437656 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  GOD87_RS16115 (GOD87_16115) pilN 3437653..3438294 (-) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  GOD87_RS16120 (GOD87_16120) pilM 3438294..3439352 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  GOD87_RS16125 (GOD87_16125) ponA 3439514..3442069 (+) 2556 WP_057094660.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=405258 GOD87_RS16110 WP_000076101.1 3436916..3437656(-) (pilO) [Acinetobacter baumannii strain XL380]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=405258 GOD87_RS16110 WP_000076101.1 3436916..3437656(-) (pilO) [Acinetobacter baumannii strain XL380]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGCATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683

Multiple sequence alignment