Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   GOD87_RS16115 Genome accession   NZ_CP046536
Coordinates   3437653..3438294 (-) Length   213 a.a.
NCBI ID   WP_000201223.1    Uniprot ID   N9LAP0
Organism   Acinetobacter baumannii strain XL380     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3432653..3443294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOD87_RS16095 (GOD87_16095) aroK 3433564..3434133 (-) 570 WP_000643712.1 shikimate kinase AroK -
  GOD87_RS16100 (GOD87_16100) pilQ 3434145..3436310 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  GOD87_RS16105 (GOD87_16105) pilP 3436378..3436905 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  GOD87_RS16110 (GOD87_16110) pilO 3436916..3437656 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  GOD87_RS16115 (GOD87_16115) pilN 3437653..3438294 (-) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  GOD87_RS16120 (GOD87_16120) pilM 3438294..3439352 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  GOD87_RS16125 (GOD87_16125) ponA 3439514..3442069 (+) 2556 WP_057094660.1 penicillin-binding protein PBP1a -
  GOD87_RS16130 (GOD87_16130) - 3442087..3442911 (-) 825 WP_002019666.1 putative RNA methyltransferase -
  GOD87_RS16135 (GOD87_16135) - 3442914..3443246 (-) 333 WP_057094662.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23999.36 Da        Isoelectric Point: 5.3968

>NTDB_id=405259 GOD87_RS16115 WP_000201223.1 3437653..3438294(-) (pilN) [Acinetobacter baumannii strain XL380]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=405259 GOD87_RS16115 WP_000201223.1 3437653..3438294(-) (pilN) [Acinetobacter baumannii strain XL380]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTCATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATCCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCACCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.061

100

0.991
  comN Acinetobacter baylyi ADP1

72.115

97.653

0.704

Multiple sequence alignment