Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   GOD87_RS15985 Genome accession   NZ_CP046536
Coordinates   3410020..3410838 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain XL380     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3405020..3415838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOD87_RS15970 (GOD87_15970) pilE 3405237..3405662 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  GOD87_RS15975 (GOD87_15975) pilY2 3405659..3406141 (-) 483 WP_001046417.1 type IV pilin protein Machinery gene
  GOD87_RS15980 (GOD87_15980) pilY1 3406154..3410008 (-) 3855 WP_000768965.1 PilC/PilY family type IV pilus protein Machinery gene
  GOD87_RS15985 (GOD87_15985) pilX 3410020..3410838 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  GOD87_RS15990 (GOD87_15990) pilW 3410835..3411836 (-) 1002 WP_057093627.1 PilW family protein Machinery gene
  GOD87_RS15995 (GOD87_15995) pilV 3411837..3412397 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  GOD87_RS16000 (GOD87_16000) fimU 3412391..3412864 (-) 474 WP_001214059.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  GOD87_RS16005 (GOD87_16005) ispH 3413034..3413984 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  GOD87_RS16010 (GOD87_16010) gmk 3414107..3414736 (+) 630 WP_000015937.1 guanylate kinase -
  GOD87_RS16015 (GOD87_16015) rpoZ 3414809..3415087 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  GOD87_RS16020 (GOD87_16020) - 3415126..3415256 (+) 131 Protein_3147 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=405251 GOD87_RS15985 WP_000149374.1 3410020..3410838(-) (pilX) [Acinetobacter baumannii strain XL380]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=405251 GOD87_RS15985 WP_000149374.1 3410020..3410838(-) (pilX) [Acinetobacter baumannii strain XL380]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGTGCAGCACTTAAAGCACATGAAAGTAACCCCGGTGCGGAATATAACTTTTGCTATAAACCAACCTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGGGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGCGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGCATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment