Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   GOD87_RS16000 Genome accession   NZ_CP046536
Coordinates   3412391..3412864 (-) Length   157 a.a.
NCBI ID   WP_001214059.1    Uniprot ID   A0A009PK04
Organism   Acinetobacter baumannii strain XL380     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3407391..3417864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOD87_RS15985 (GOD87_15985) pilX 3410020..3410838 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  GOD87_RS15990 (GOD87_15990) pilW 3410835..3411836 (-) 1002 WP_057093627.1 PilW family protein Machinery gene
  GOD87_RS15995 (GOD87_15995) pilV 3411837..3412397 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  GOD87_RS16000 (GOD87_16000) fimU 3412391..3412864 (-) 474 WP_001214059.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  GOD87_RS16005 (GOD87_16005) ispH 3413034..3413984 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  GOD87_RS16010 (GOD87_16010) gmk 3414107..3414736 (+) 630 WP_000015937.1 guanylate kinase -
  GOD87_RS16015 (GOD87_16015) rpoZ 3414809..3415087 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  GOD87_RS16020 (GOD87_16020) - 3415126..3415256 (+) 131 Protein_3147 hypothetical protein -
  GOD87_RS16025 (GOD87_16025) - 3415297..3417402 (+) 2106 WP_001117590.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.47 Da        Isoelectric Point: 9.3085

>NTDB_id=405254 GOD87_RS16000 WP_001214059.1 3412391..3412864(-) (fimU) [Acinetobacter baumannii strain XL380]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWKTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=405254 GOD87_RS16000 WP_001214059.1 3412391..3412864(-) (fimU) [Acinetobacter baumannii strain XL380]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGTCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGAAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACTCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009PK04

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994

Multiple sequence alignment