Detailed information NTG0405233

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: GOD87_RS04090
• Genome accession: NZ_CP046536
• Coordinates: 857144..858262 (-)
• Length: 372 a.a.
• NCBI ID: WP_000347039.1
• Uniprot ID: A0A9P2XLL8
• Organism: Acinetobacter baumannii strain XL380
• Function: mediate the depolymerization of the type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 852144..863262

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GOD87_RS04060 (GOD87_04060)	-	852973..853821 (+)	849	WP_000336548.1	class II glutamine amidotransferase	-
GOD87_RS04065 (GOD87_04065)	-	854074..854529 (+)	456	WP_000782976.1	bacteriohemerythrin	-
GOD87_RS04070 (GOD87_04070)	-	854682..855749 (+)	1068	WP_010590411.1	membrane protein	-
GOD87_RS04075 (GOD87_04075)	-	855749..856072 (+)	324	WP_000442581.1	RnfH family protein	-
GOD87_RS04080 (GOD87_04080)	-	856127..856525 (-)	399	WP_001170994.1	outer membrane protein assembly factor BamE	-
GOD87_RS04085 (GOD87_04085)	fur	856637..857074 (+)	438	WP_001122847.1	ferric iron uptake transcriptional regulator	-
GOD87_RS04090 (GOD87_04090)	pilU	857144..858262 (-)	1119	WP_000347039.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
GOD87_RS04095 (GOD87_04095)	pilT	858290..859327 (-)	1038	WP_057094168.1	type IV pilus twitching motility protein PilT	Machinery gene
GOD87_RS04100 (GOD87_04100)	-	859454..860146 (+)	693	WP_031959811.1	YggS family pyridoxal phosphate-dependent enzyme	-

Sequence

Protein

• Length: 372 a.a.
• Molecular weight: 41933.13 Da
• Isoelectric Point: 6.6944

>NTDB_id=405233 GOD87_RS04090 WP_000347039.1 857144..858262(-) (pilU) [Acinetobacter baumannii strain XL380]
MDFNDLLNLMVEKKSSDLFITDGVAPSMKINGQIVPISKNSLSGEVIGQLLHSIMSEKQRREFAETRECNFAIMNREKTA
RFRVSAFQQRDMPGMVLRRIETKIPSIDDLQLPPVLKDLSMTKRGIIIFVGATGTGKSTSLASMISHRNHNSKGHIITIE
DPIEFIHEHAGCIITQREVGIDTDSFEIALKNTLRQAPDVILIGEIRSREVMDYAIGFAETGHLVLATMHANNANQALDR
IIHFFESDRHSQLYMDLSLNLKAMIAQQLIPTPDGNSRRAAIEILINSPLISDYIRKGEIHEIKDLMKRSRELGMQTFDQ
ALFDLYKAGQITYKDALKHADSPNDLRLTIKLADEGPDQLSDGKQHLTFDRQ

Nucleotide

• Length: 1119 bp

>NTDB_id=405233 GOD87_RS04090 WP_000347039.1 857144..858262(-) (pilU) [Acinetobacter baumannii strain XL380]
ATGGATTTTAATGACCTACTCAACCTGATGGTTGAAAAAAAATCATCGGATCTCTTTATTACAGATGGCGTTGCGCCCTC
TATGAAGATTAACGGGCAAATTGTTCCAATTTCAAAAAATAGTCTTTCTGGGGAAGTGATTGGTCAACTGTTACATTCCA
TCATGAGTGAAAAACAACGCAGAGAATTTGCAGAAACTCGTGAATGTAACTTTGCCATTATGAACCGTGAAAAAACGGCG
CGTTTTCGTGTCAGTGCTTTTCAGCAGCGCGACATGCCAGGCATGGTACTACGTCGTATTGAAACCAAGATTCCTTCAAT
TGATGACTTGCAGTTACCGCCTGTACTTAAAGATTTATCGATGACCAAACGCGGCATTATTATTTTCGTAGGCGCGACAG
GTACAGGTAAATCCACTTCATTGGCTTCAATGATCAGCCATCGTAACCATAACTCTAAGGGCCATATCATTACCATTGAA
GACCCGATTGAGTTTATTCACGAACATGCAGGCTGCATCATTACTCAGCGTGAGGTCGGGATCGATACCGACTCATTTGA
AATTGCCTTGAAAAATACATTACGACAAGCGCCGGATGTCATCTTAATTGGTGAGATTCGTTCTCGTGAAGTCATGGACT
ACGCGATTGGCTTTGCTGAAACAGGCCATCTTGTATTAGCTACCATGCACGCCAACAACGCCAACCAAGCACTCGACCGT
ATTATTCACTTTTTTGAAAGTGACCGTCATAGCCAGCTTTATATGGACTTGTCACTTAACTTAAAGGCTATGATTGCGCA
GCAGCTCATTCCAACACCAGATGGTAATTCACGCCGTGCAGCAATTGAGATTTTAATTAACTCACCATTAATTTCAGACT
ACATCCGTAAAGGTGAAATTCATGAAATTAAAGATTTGATGAAACGCTCACGTGAACTTGGTATGCAGACCTTTGACCAA
GCTTTATTTGATTTATATAAAGCTGGTCAAATTACCTACAAAGATGCACTTAAACATGCTGACTCACCGAACGATTTACG
TTTAACCATTAAACTTGCAGATGAAGGTCCTGATCAATTATCAGACGGAAAACAGCATTTAACTTTTGACCGCCAGTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (31-270)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Acinetobacter baylyi ADP1	75.926	100	0.772
pilU	Pseudomonas stutzeri DSM 10701	69.565	98.925	0.688
pilU	Vibrio cholerae strain A1552	53.243	99.462	0.53
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	42.486	93.011	0.395