Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | GM698_RS10250 | Genome accession | NZ_CP046532 |
| Coordinates | 2133423..2133875 (+) | Length | 150 a.a. |
| NCBI ID | WP_209289403.1 | Uniprot ID | - |
| Organism | Mannheimia sp. ZY171111 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2099356..2139652 | 2133423..2133875 | within | 0 |
Gene organization within MGE regions
Location: 2099356..2139652
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GM698_RS10000 (GM698_09935) | - | 2099356..2099952 (+) | 597 | WP_159630058.1 | DedA family protein | - |
| GM698_RS10005 (GM698_09940) | - | 2100637..2101671 (-) | 1035 | WP_209289374.1 | phage portal protein | - |
| GM698_RS10010 (GM698_09945) | - | 2101680..2103482 (-) | 1803 | WP_209289808.1 | terminase ATPase subunit family protein | - |
| GM698_RS10015 (GM698_09950) | - | 2103636..2104460 (+) | 825 | WP_209289375.1 | GPO family capsid scaffolding protein | - |
| GM698_RS10020 (GM698_09955) | - | 2104476..2105504 (+) | 1029 | WP_209289376.1 | phage major capsid protein, P2 family | - |
| GM698_RS10025 (GM698_09960) | - | 2105514..2106185 (+) | 672 | WP_209289377.1 | terminase endonuclease subunit | - |
| GM698_RS10030 (GM698_09965) | - | 2106295..2106810 (+) | 516 | WP_209289378.1 | head completion/stabilization protein | - |
| GM698_RS10035 (GM698_09970) | - | 2106810..2107022 (+) | 213 | WP_176808496.1 | tail protein X | - |
| GM698_RS10040 (GM698_09975) | - | 2107044..2107247 (+) | 204 | WP_176808495.1 | HP1 family phage holin | - |
| GM698_RS10045 (GM698_09980) | - | 2107247..2107774 (+) | 528 | WP_209289379.1 | lysozyme | - |
| GM698_RS10050 (GM698_09985) | - | 2107776..2108231 (+) | 456 | WP_209289380.1 | hypothetical protein | - |
| GM698_RS10820 | lysC | 2108125..2108355 (+) | 231 | WP_371739895.1 | Rz1-like lysis system protein LysC | - |
| GM698_RS10055 (GM698_09990) | - | 2108380..2108601 (+) | 222 | WP_176808492.1 | TraR/DksA family transcriptional regulator | - |
| GM698_RS10060 (GM698_09995) | - | 2108598..2109083 (+) | 486 | WP_176808491.1 | phage tail protein | - |
| GM698_RS10065 (GM698_10000) | - | 2109076..2109540 (+) | 465 | WP_176808490.1 | phage virion morphogenesis protein | - |
| GM698_RS10070 (GM698_10005) | - | 2109568..2109846 (-) | 279 | WP_176808489.1 | hypothetical protein | - |
| GM698_RS10630 | - | 2110234..2112939 (+) | 2706 | WP_371739923.1 | tape measure protein | - |
| GM698_RS10080 (GM698_10015) | - | 2113565..2114221 (+) | 657 | WP_245189267.1 | BRO family protein | - |
| GM698_RS10085 (GM698_10020) | - | 2114294..2114473 (+) | 180 | WP_209289381.1 | hypothetical protein | - |
| GM698_RS10090 (GM698_10025) | - | 2114466..2114753 (+) | 288 | WP_209289382.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| GM698_RS10095 (GM698_10030) | - | 2114880..2115449 (+) | 570 | WP_209289383.1 | phage baseplate assembly protein V | - |
| GM698_RS10100 (GM698_10035) | - | 2115449..2115784 (+) | 336 | WP_176808480.1 | GPW/gp25 family protein | - |
| GM698_RS10105 (GM698_10040) | - | 2115781..2116698 (+) | 918 | WP_209289384.1 | baseplate J/gp47 family protein | - |
| GM698_RS10110 (GM698_10045) | - | 2116688..2117230 (+) | 543 | WP_176808478.1 | phage tail protein I | - |
| GM698_RS10635 | - | 2117232..2119553 (+) | 2322 | WP_245189268.1 | phage tail protein | - |
| GM698_RS10130 (GM698_10065) | - | 2119562..2120236 (+) | 675 | WP_245189269.1 | DUF4376 domain-containing protein | - |
| GM698_RS10135 (GM698_10070) | - | 2120220..2120489 (+) | 270 | WP_209289385.1 | hypothetical protein | - |
| GM698_RS10140 (GM698_10075) | - | 2120597..2121778 (+) | 1182 | WP_209289386.1 | phage tail sheath protein | - |
| GM698_RS10145 (GM698_10080) | - | 2121788..2122294 (+) | 507 | WP_209289387.1 | phage major tail tube protein | - |
| GM698_RS10150 (GM698_10085) | - | 2122360..2122671 (+) | 312 | WP_176808473.1 | phage tail assembly protein | - |
| GM698_RS10155 (GM698_10090) | - | 2122704..2122811 (+) | 108 | WP_371739924.1 | GpE family phage tail protein | - |
| GM698_RS10160 (GM698_10095) | - | 2122876..2123313 (+) | 438 | WP_209289388.1 | phage tail protein | - |
| GM698_RS10165 (GM698_10100) | - | 2123313..2124545 (+) | 1233 | WP_209289389.1 | phage late control D family protein | - |
| GM698_RS10170 (GM698_10105) | - | 2124545..2124919 (+) | 375 | WP_209289390.1 | hypothetical protein | - |
| GM698_RS10175 (GM698_10110) | - | 2125069..2126247 (-) | 1179 | WP_209289391.1 | hypothetical protein | - |
| GM698_RS10180 (GM698_10115) | - | 2126274..2126546 (-) | 273 | WP_209289392.1 | excalibur calcium-binding domain-containing protein | - |
| GM698_RS10185 (GM698_10120) | yidD | 2126566..2126787 (-) | 222 | WP_371739896.1 | membrane protein insertion efficiency factor YidD | - |
| GM698_RS10190 (GM698_10125) | - | 2126774..2127010 (-) | 237 | WP_209289394.1 | DUF4177 domain-containing protein | - |
| GM698_RS10195 (GM698_10130) | - | 2127049..2127714 (-) | 666 | WP_209289395.1 | S24 family peptidase | - |
| GM698_RS10200 (GM698_10135) | - | 2127847..2128275 (+) | 429 | WP_209289396.1 | hypothetical protein | - |
| GM698_RS10205 | - | 2128337..2128495 (+) | 159 | WP_209289397.1 | hypothetical protein | - |
| GM698_RS10210 (GM698_10140) | - | 2128483..2128632 (+) | 150 | WP_209289398.1 | YdaS family helix-turn-helix protein | - |
| GM698_RS10215 (GM698_10145) | - | 2128689..2129099 (-) | 411 | WP_209289399.1 | hypothetical protein | - |
| GM698_RS10220 (GM698_10150) | - | 2129239..2129511 (+) | 273 | WP_159630130.1 | hypothetical protein | - |
| GM698_RS10225 (GM698_10155) | - | 2129594..2129923 (+) | 330 | WP_176808461.1 | hypothetical protein | - |
| GM698_RS10230 (GM698_10160) | - | 2129933..2130226 (+) | 294 | WP_159630132.1 | hypothetical protein | - |
| GM698_RS10235 (GM698_10165) | - | 2130287..2130550 (+) | 264 | WP_209289400.1 | hypothetical protein | - |
| GM698_RS10240 (GM698_10170) | - | 2130534..2130866 (+) | 333 | WP_209289401.1 | hypothetical protein | - |
| GM698_RS10245 (GM698_10175) | - | 2130863..2133235 (+) | 2373 | WP_209289402.1 | replication endonuclease | - |
| GM698_RS10250 (GM698_10180) | ssb | 2133423..2133875 (+) | 453 | WP_209289403.1 | single-stranded DNA-binding protein | Machinery gene |
| GM698_RS10255 (GM698_10185) | - | 2133907..2134218 (+) | 312 | WP_245189270.1 | DUF6378 domain-containing protein | - |
| GM698_RS10260 (GM698_10190) | - | 2134208..2134477 (+) | 270 | WP_209289405.1 | hypothetical protein | - |
| GM698_RS10265 (GM698_10195) | - | 2134452..2134742 (+) | 291 | WP_209289406.1 | hypothetical protein | - |
| GM698_RS10270 (GM698_10200) | - | 2134742..2134936 (+) | 195 | WP_209289407.1 | hypothetical protein | - |
| GM698_RS10275 (GM698_10205) | - | 2134970..2135149 (-) | 180 | WP_209289408.1 | ribbon-helix-helix protein, CopG family | - |
| GM698_RS10280 (GM698_10210) | - | 2135428..2136426 (-) | 999 | WP_209289409.1 | site-specific integrase | - |
| GM698_RS10290 (GM698_10220) | apaH | 2136791..2137603 (-) | 813 | WP_209289410.1 | bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH | - |
| GM698_RS10295 (GM698_10225) | - | 2137676..2139652 (-) | 1977 | WP_209289411.1 | exoribonuclease II | - |
Sequence
Protein
Download Length: 150 a.a. Molecular weight: 17124.57 Da Isoelectric Point: 8.8996
>NTDB_id=405190 GM698_RS10250 WP_209289403.1 2133423..2133875(+) (ssb) [Mannheimia sp. ZY171111]
MNLVTLIGRLGQDPDIRTMQNGEKVAVLSVATTEKWTDKQTGVKKESTEWHRVVLYRRLAEIAELYVKKGHLVSIIGKIK
TRKWTDSNGVERSITEIIAEQMQMLSSGEKNTPNKAENKPQPKQKNQDVMTADEQKDIPQFDDDICKQPF
MNLVTLIGRLGQDPDIRTMQNGEKVAVLSVATTEKWTDKQTGVKKESTEWHRVVLYRRLAEIAELYVKKGHLVSIIGKIK
TRKWTDSNGVERSITEIIAEQMQMLSSGEKNTPNKAENKPQPKQKNQDVMTADEQKDIPQFDDDICKQPF
Nucleotide
Download Length: 453 bp
>NTDB_id=405190 GM698_RS10250 WP_209289403.1 2133423..2133875(+) (ssb) [Mannheimia sp. ZY171111]
ATGAATTTAGTTACATTAATCGGTCGATTGGGGCAAGACCCTGATATTAGAACAATGCAAAACGGTGAGAAAGTTGCGGT
TTTATCGGTAGCAACAACAGAAAAATGGACGGATAAGCAAACTGGCGTGAAGAAAGAAAGCACCGAATGGCATAGGGTGG
TGCTTTATCGCCGATTAGCTGAAATTGCCGAATTGTATGTAAAAAAAGGGCATTTGGTATCAATTATCGGGAAAATTAAA
ACCCGAAAATGGACGGATAGCAACGGTGTTGAGCGGAGTATTACAGAGATTATTGCCGAGCAGATGCAAATGCTAAGTAG
TGGTGAGAAAAATACGCCAAATAAGGCAGAAAATAAACCGCAACCAAAGCAGAAAAATCAAGACGTGATGACTGCGGACG
AGCAGAAAGATATTCCTCAGTTTGATGATGATATATGCAAACAACCTTTTTAG
ATGAATTTAGTTACATTAATCGGTCGATTGGGGCAAGACCCTGATATTAGAACAATGCAAAACGGTGAGAAAGTTGCGGT
TTTATCGGTAGCAACAACAGAAAAATGGACGGATAAGCAAACTGGCGTGAAGAAAGAAAGCACCGAATGGCATAGGGTGG
TGCTTTATCGCCGATTAGCTGAAATTGCCGAATTGTATGTAAAAAAAGGGCATTTGGTATCAATTATCGGGAAAATTAAA
ACCCGAAAATGGACGGATAGCAACGGTGTTGAGCGGAGTATTACAGAGATTATTGCCGAGCAGATGCAAATGCTAAGTAG
TGGTGAGAAAAATACGCCAAATAAGGCAGAAAATAAACCGCAACCAAAGCAGAAAAATCAAGACGTGATGACTGCGGACG
AGCAGAAAGATATTCCTCAGTTTGATGATGATATATGCAAACAACCTTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
42.391 |
100 |
0.52 |
| ssb | Vibrio cholerae strain A1552 |
42.286 |
100 |
0.493 |
| ssb | Neisseria gonorrhoeae MS11 |
49.107 |
74.667 |
0.367 |
| ssb | Neisseria meningitidis MC58 |
49.107 |
74.667 |
0.367 |