Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   GM698_RS04310 Genome accession   NZ_CP046532
Coordinates   904421..905560 (-) Length   379 a.a.
NCBI ID   WP_209289706.1    Uniprot ID   -
Organism   Mannheimia sp. ZY171111     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 899421..910560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GM698_RS04265 (GM698_04225) - 899525..899785 (+) 261 WP_176807923.1 helix-turn-helix domain-containing protein -
  GM698_RS04270 (GM698_04230) - 899962..900366 (-) 405 WP_176809344.1 type II toxin-antitoxin system VapC family toxin -
  GM698_RS04275 (GM698_04235) - 900363..900602 (-) 240 WP_025235144.1 antitoxin -
  GM698_RS04280 (GM698_04240) rplL 900857..901222 (-) 366 WP_005621166.1 50S ribosomal protein L7/L12 -
  GM698_RS04285 (GM698_04245) rplJ 901281..901772 (-) 492 WP_159628947.1 50S ribosomal protein L10 -
  GM698_RS04290 (GM698_04250) rplA 902052..902741 (-) 690 WP_176807921.1 50S ribosomal protein L1 -
  GM698_RS04295 (GM698_04255) rplK 902746..903174 (-) 429 WP_159628945.1 50S ribosomal protein L11 -
  GM698_RS04300 (GM698_04260) nusG 903320..903883 (-) 564 WP_176807920.1 transcription termination/antitermination protein NusG -
  GM698_RS04305 (GM698_04265) secE 903885..904298 (-) 414 WP_176807919.1 preprotein translocase subunit SecE -
  GM698_RS04310 (GM698_04270) dprA 904421..905560 (-) 1140 WP_209289706.1 DNA-processing protein DprA Machinery gene
  GM698_RS04315 (GM698_04275) def 905649..906188 (+) 540 WP_176807913.1 peptide deformylase -
  GM698_RS04320 (GM698_04280) rfaD 906228..907154 (+) 927 WP_176809347.1 ADP-glyceromanno-heptose 6-epimerase -
  GM698_RS04325 (GM698_04285) - 907190..907432 (+) 243 WP_159628937.1 PTS transporter subunit EIIB -
  GM698_RS04330 (GM698_04290) - 907480..908301 (-) 822 WP_176807911.1 MurR/RpiR family transcriptional regulator -
  GM698_RS04335 (GM698_04295) - 908439..909779 (-) 1341 WP_159628935.1 PTS sugar transporter subunit IIC -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 42301.79 Da        Isoelectric Point: 6.3408

>NTDB_id=405179 GM698_RS04310 WP_209289706.1 904421..905560(-) (dprA) [Mannheimia sp. ZY171111]
MAYHYDLLRLLQVPQMGAQRIGRLLAELNFAEFCHYDKLQLKQIGWNEKQIQRWFNPDQKWIDQAMTWSELPNQQIVTLF
DENYPFLLKQISTAPPLIYVKGNVESLSLPQIAIVGSRDYSHYGEYWAGQFAAELARHNIIITSGLAIGIDGFAHQKIVM
EQGITIAVLGSGLNQVYPARHKKLAEQIVDLGGALVSEFLPNQPPVAENFPRRNRIISGLSLGTLVIEATLNSGSLITAR
YALEQGREVFALPNAVQNPYAQGCHKLIKEGALLVETVEDILEAVAHQYQPQQIPLFKASQTVVSKPLQAVKKEHFFAKN
TPNLTACQQSIYQHISLDPISIDDLAKVTEMPVETLLVELLGLELLGVIKQISGGYVVN

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=405179 GM698_RS04310 WP_209289706.1 904421..905560(-) (dprA) [Mannheimia sp. ZY171111]
ATGGCATATCACTACGATTTATTACGATTATTACAAGTGCCGCAAATGGGGGCTCAACGTATAGGGCGATTATTGGCGGA
ACTCAATTTTGCTGAATTTTGCCACTATGACAAACTTCAACTCAAACAAATAGGTTGGAATGAAAAGCAAATTCAACGTT
GGTTTAATCCTGATCAAAAATGGATTGATCAGGCGATGACTTGGTCAGAATTGCCAAATCAGCAAATTGTGACACTCTTT
GATGAAAATTATCCGTTTCTCTTAAAACAAATTTCGACTGCGCCACCGTTAATTTATGTAAAGGGAAATGTGGAAAGCCT
TTCTCTGCCACAAATTGCGATTGTTGGCAGCCGAGACTATTCTCATTATGGTGAATATTGGGCTGGGCAATTTGCTGCCG
AATTAGCTCGCCATAATATTATCATTACCAGCGGTTTAGCCATTGGTATTGACGGTTTTGCCCATCAAAAAATCGTTATG
GAACAAGGCATAACGATTGCCGTGTTAGGGAGTGGATTAAATCAAGTCTATCCTGCTCGCCATAAAAAATTAGCCGAACA
AATTGTTGATTTAGGTGGTGCATTGGTGTCGGAGTTCTTGCCTAATCAGCCGCCGGTGGCAGAAAATTTTCCTCGTCGTA
ATCGAATTATTAGTGGTTTGTCGCTCGGCACTTTAGTTATTGAAGCAACGCTTAATAGTGGCTCACTGATTACCGCTCGT
TATGCGTTGGAACAAGGCAGAGAGGTTTTTGCCTTACCGAATGCAGTGCAAAATCCGTATGCTCAAGGCTGTCACAAATT
AATTAAAGAAGGGGCGTTGTTAGTTGAAACTGTTGAGGATATTTTAGAAGCTGTTGCTCACCAATACCAACCCCAGCAAA
TCCCTTTGTTTAAAGCGTCTCAAACAGTGGTAAGCAAACCTTTACAAGCGGTGAAAAAAGAGCATTTTTTTGCAAAAAAT
ACGCCAAATTTAACCGCTTGTCAGCAGAGCATTTATCAACATATTAGCTTAGATCCAATTTCTATTGATGATCTAGCAAA
GGTAACAGAAATGCCAGTAGAAACATTATTAGTGGAATTGCTCGGGTTAGAATTATTAGGCGTGATTAAGCAGATAAGTG
GAGGGTATGTGGTAAACTAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(319-375)

DNA recombination-mediator protein A (DNA_processg_A)

(73-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

74.278

100

0.747
  dprA Haemophilus influenzae Rd KW20

52.011

91.821

0.478
  dprA Vibrio campbellii strain DS40M4

44.92

98.681

0.443
  dprA Vibrio cholerae strain A1552

42.328

99.736

0.422
  dprA Legionella pneumophila strain ERS1305867

39.481

91.557

0.361

Multiple sequence alignment