Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   GOM46_RS06125 Genome accession   NZ_CP046525
Coordinates   1222442..1222735 (-) Length   97 a.a.
NCBI ID   WP_235083340.1    Uniprot ID   -
Organism   Streptococcus infantis strain SO     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1222920..1231207 1222442..1222735 flank 185


Gene organization within MGE regions


Location: 1222442..1231207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM46_RS06125 (GOM46_06110) HI0659 1222442..1222735 (-) 294 WP_235083340.1 helix-turn-helix domain-containing protein Machinery gene
  GOM46_RS06130 (GOM46_06115) - 1222920..1223285 (-) 366 WP_235083341.1 TIGR02328 family protein -
  GOM46_RS06135 (GOM46_06120) - 1223269..1223673 (-) 405 WP_235083342.1 YbgA family protein -
  GOM46_RS06140 (GOM46_06125) - 1223755..1225356 (-) 1602 WP_235083343.1 type I restriction-modification system subunit M -
  GOM46_RS06145 (GOM46_06130) - 1225561..1226457 (-) 897 Protein_1197 HAD family hydrolase -
  GOM46_RS06150 (GOM46_06135) - 1226473..1227726 (-) 1254 WP_235083344.1 restriction endonuclease subunit S -
  GOM46_RS06155 (GOM46_06140) - 1227719..1230409 (-) 2691 WP_235083345.1 DUF4062 domain-containing protein -
  GOM46_RS06160 (GOM46_06145) - 1230422..1231207 (-) 786 WP_235083346.1 macro domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10811.49 Da        Isoelectric Point: 6.3741

>NTDB_id=405080 GOM46_RS06125 WP_235083340.1 1222442..1222735(-) (HI0659) [Streptococcus infantis strain SO]
MKNRAIGSNWKDVRSQLFTKEEILESDMRVAIMSELIEARRAQGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLEVVPLEQENS

Nucleotide


Download         Length: 294 bp        

>NTDB_id=405080 GOM46_RS06125 WP_235083340.1 1222442..1222735(-) (HI0659) [Streptococcus infantis strain SO]
ATGAAAAATAGAGCCATTGGAAGTAACTGGAAGGATGTCCGGTCTCAACTCTTCACCAAGGAGGAAATCCTTGAAAGTGA
TATGCGAGTGGCTATCATGAGTGAACTGATTGAAGCTAGACGTGCGCAAGGAATTAGTCAGAAAAAGCTAGAAGAACTCA
GTGGAGTGAGTCAGCCTGTCATAGCCAGGATGGAAACAGGGAAGACGAGTCCACAGTTAGATACCGTCTTAAAAGTTTTA
GCCAGTTTAGGCAAGACACTAGAGGTTGTACCGCTTGAACAGGAAAATAGTTGA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(37-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

58.696

94.845

0.557

Multiple sequence alignment